Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30610 724 / 0 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT2G24000 632 / 0 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT2G24010 616 / 0 SCPL23 serine carboxypeptidase-like 23 (.1) AT3G02110 592 / 0 SCPL25 serine carboxypeptidase-like 25 (.1) AT2G35780 540 / 0 SCPL26 serine carboxypeptidase-like 26 (.1) AT3G07990 523 / 0 SCPL27 serine carboxypeptidase-like 27 (.1) AT4G30810 483 / 5e-168 SCPL29 serine carboxypeptidase-like 29 (.1) AT5G23210 473 / 7e-164 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT2G35770 459 / 3e-159 SCPL28 serine carboxypeptidase-like 28 (.1) AT3G63470 455 / 1e-156 SCPL40 serine carboxypeptidase-like 40 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019954 [exp] 925 / 0 AT4G30610 720 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10015382 [exp] 600 / 0 AT3G02110 731 / 0.0 serine carboxypeptidase-like 25 (.1) Lus10023505 [exp] 522 / 0 AT3G07990 717 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10040387 [exp] 520 / 0 AT3G07990 715 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10041412 [exp] 488 / 3e-169 AT2G35770 580 / 0.0 serine carboxypeptidase-like 28 (.1) Lus10017391 [exp] 478 / 8e-166 AT5G23210 642 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10010190 [exp] 476 / 2e-165 AT5G23210 647 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10011213 [exp] 437 / 3e-150 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2) Lus10018467 [exp] 428 / 1e-146 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G183200 [exp] 753 / 0 AT4G30610 739 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.018G105700 [exp] 728 / 0 AT4G30610 710 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.004G120100 [exp] 617 / 0 AT3G02110 755 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.017G094100 [exp] 616 / 0 AT3G02110 758 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.008G041800 [exp] 533 / 0 AT3G07990 736 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.010G220100 [exp] 531 / 0 AT3G07990 735 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.008G041700 [exp] 478 / 3e-166 AT2G35770 608 / 0.0 serine carboxypeptidase-like 28 (.1) Potri.010G220200 [exp] 473 / 3e-164 AT3G07990 600 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.018G103100 [exp] 468 / 3e-162 AT4G30810 682 / 0.0 serine carboxypeptidase-like 29 (.1) Potri.005G091700 [exp] 459 / 2e-158 AT5G23210 652 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10015489 pacid=23173595 polypeptide=Lus10015489 locus=Lus10015489.g ID=Lus10015489.BGIv1.0 annot-version=v1.0 ATGGCTGTTTCAAGAAGCAGCCATTGTCGTCGTCACTTCTCTTATTGCTACAACTACAATCATAATAATAATAATAATAACCTAGTCCTAATTCCCTTTT CATTGTTCTTCCTCCTCATCTCTACTTGTAACTCTGCCGCCGCCGGGCTAACGACGAGAGAGCAGGACCATGACAGAATCTCCTCTCTTCCCGGTCAGCC GCCGGTGGCATTCTCACAATTCTCCGGCTACGTCACGGTCAACGAAGAACACGGGCGTGCATTGTTCTACTGGCTCACCGAAGCTCCACCTTCTTCAAAT CCCAAGCCACTACTCCTCTGGCTCAATGGAGGGCCAGGGTGTTCATCAGTGGCATATGGAGCATCAGAAGAGATTGGTCCCTTCAGGATTAACAAAACTA CATCTACCCTCTTTCTCAACAAATATTCCTGGAACAGAGAAGCAAATATTCTGTTCCTGGAATCACCTGCTGGAGTTGGATTTTCCTACACAAACACAAC CTCTAACCTCAAAGATTCTGGAGATGCAAGGACATCTCAGGATGCTTTGATTTTCCTCCTTAAATGGATGTCAAGATTCCCGCAGTACAAATTCAGAGAC TTCTACATTGCTGGGGAAAGTTATGCTGGGCATTATGTACCCCAGCTAGCTAAGAGAATCCACGATTACAACAAAGCACACCCCAATCCCATCATCAACC TCAAAGGAATCATGTTGGGAAACGCTGTGACGGATAATTACTACGACGGGATTGGAACCGTGACATATTGGTGGAGTCACTCCATGATCTCGGATCGATC TTACAGATCGATCCTCGATCACTGCGATTTCGGGGAGGATAAGACGTCGACAAAATGTGACAATGCAGTGAGCTACGCCATGAACAGGGAGTTTGGCGAC ATTGATCAGTACAGCATTTACACGCCGTCTTGTTTGCATCCCAAGAGCGGAGAGAACGGCACAACGAGCAGCAGCAGGTTTCTCAGGATGAAGAATACGG TACTGCATCGGCCGATTTCAGGCTATGATCCGTGTACTGAGAGCTATGCCGAGAAGTATTACAATCGGCCAGATGTTCAGAGGGCTATGCATGCTAATGT GACTGGGATGATCCCATACAAATGGACTGCTTGCAGTGATATACTGATTAAGTACTGGAAGGACTCAGATGCATCAATGTTGCCGACATACAAGGAGCTG ATTGCTGCTGGTTTGAGGATCTGGGTTTTCAGTGGGGATACAGATTCAGTAGTTCCAGTTACAGCCACAAGGTTCTCCCTCAGCCATCTAAACCTGACTG TCAAAACCAGATGGTATCCATGGAAATCTGGAAACCAGGTTGGGGGATGGACAGAAGAGTATGAAGGGCTGACATTTGCAACAGTGAGGGGAGCAGGGCA TGAAGTTCCTTTATTTCAACCAAGAAGGGCTTTCATTCTTTTCACATCTTTCTTGGCTGGCAAACAACTACCAAGATCTTCTTGA
AA sequence Show only first row Show all	>Lus10015489 pacid=23173595 polypeptide=Lus10015489 locus=Lus10015489.g ID=Lus10015489.BGIv1.0 annot-version=v1.0 MAVSRSSHCRRHFSYCYNYNHNNNNNNLVLIPFSLFFLLISTCNSAAAGLTTREQDHDRISSLPGQPPVAFSQFSGYVTVNEEHGRALFYWLTEAPPSSN PKPLLLWLNGGPGCSSVAYGASEEIGPFRINKTTSTLFLNKYSWNREANILFLESPAGVGFSYTNTTSNLKDSGDARTSQDALIFLLKWMSRFPQYKFRD FYIAGESYAGHYVPQLAKRIHDYNKAHPNPIINLKGIMLGNAVTDNYYDGIGTVTYWWSHSMISDRSYRSILDHCDFGEDKTSTKCDNAVSYAMNREFGD IDQYSIYTPSCLHPKSGENGTTSSSRFLRMKNTVLHRPISGYDPCTESYAEKYYNRPDVQRAMHANVTGMIPYKWTACSDILIKYWKDSDASMLPTYKEL IAAGLRIWVFSGDTDSVVPVTATRFSLSHLNLTVKTRWYPWKSGNQVGGWTEEYEGLTFATVRGAGHEVPLFQPRRAFILFTSFLAGKQLPRSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30610		SCPL24, BRS1	SERINE CARBOXYPEPTIDASE 24 PRE...		Lus10015489 [exp]	0	1
AT4G30610		SCPL24, BRS1	SERINE CARBOXYPEPTIDASE 24 PRE...		Lus10019954 [exp]	1.0	0.9029
AT1G75060			unknown protein		Lus10017506 [exp]	3.5	0.8568
AT5G01870			Bifunctional inhibitor/lipid-t...		Lus10025148 [exp]	5.7	0.8897
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Lus10002230 [exp]	6.0	0.8567
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10018724 [exp]	7.5	0.8217
					Lus10008493 [exp]	10.3	0.7506
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10014327 [exp]	11.4	0.8289
AT5G57410			Afadin/alpha-actinin-binding p...		Lus10015526 [exp]	15.0	0.8433
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Lus10039173 [exp]	16.0	0.7615
					Lus10035688 [exp]	16.5	0.8412

Compare expression of checked genes

Lus10015489 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.