Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30620 200 / 4e-67 Uncharacterised BCR, YbaB family COG0718 (.1) AT2G24020 200 / 5e-67 Uncharacterised BCR, YbaB family COG0718 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G105600 [exp] 206 / 2e-69 AT2G24020 240 / 1e-81 Uncharacterised BCR, YbaB family COG0718 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02575 [flax] [poplar] YbaB_DNA_bd YbaB/EbfC DNA-binding family
Representative CDS sequence Show only first row Show all	>Lus10015490 pacid=23173683 polypeptide=Lus10015490 locus=Lus10015490.g ID=Lus10015490.BGIv1.0 annot-version=v1.0 ATGCTGGGGAATATGCAGAACCTGTATGAGACGGTGAAGAAGGCAGAGAACCTGTTTGGGACGGTGAAGAAGGCACAGATGGTTGTCCAAGTTGAGGCGG TTCGGGTGCAAAAGGAACTTGCTGCTGCAGAGTTTGATGGTTATTGTGAAGGTGAACTAATCAAGGTGACACTATCCGGTAACCAACAGCCTGTTCGCAC AGAGATTACTGAGGCTGCCATGGAATTAGGTTCAGAGAAGCTCTCACTTCTTGTCACGGAGGCATACAAGGATGCACACCAAAAGAGCGTCCTGGCCATG AAGGAGCGAATGGGTGACCTTGCCCAAAGCTTAGGAATGCCTCCAGGTCTTGGTGAGGGTTTGAAGTAA
AA sequence Show only first row Show all	>Lus10015490 pacid=23173683 polypeptide=Lus10015490 locus=Lus10015490.g ID=Lus10015490.BGIv1.0 annot-version=v1.0 MLGNMQNLYETVKKAENLFGTVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGSEKLSLLVTEAYKDAHQKSVLAM KERMGDLAQSLGMPPGLGEGLK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24020			Uncharacterised BCR, YbaB fami...		Lus10015490 [exp]	0	1
AT4G02725			unknown protein		Lus10014675 [exp]	2.2	0.9693
AT1G18170			FKBP-like peptidyl-prolyl cis-...		Lus10038954 [exp]	5.8	0.9605
AT2G38570			unknown protein		Lus10014180 [exp]	6.3	0.9318
AT4G02725			unknown protein		Lus10006915 [exp]	6.9	0.9553
AT4G27390			unknown protein		Lus10038584 [exp]	11.2	0.9421
AT5G40950		RPL27	ribosomal protein large subuni...		Lus10041553 [exp]	12.6	0.9538
AT1G65260		VIPP1, PTAC4	VESICLE-INDUCING PROTEIN IN PL...		Lus10025601 [exp]	12.8	0.9366
AT3G27160		GHS1	GLUCOSE HYPERSENSITIVE 1, Ribo...		Lus10012528 [exp]	13.4	0.9449
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Lus10016811 [exp]	14.0	0.9508
AT5G22340			unknown protein		Lus10043400 [exp]	14.1	0.9510

Compare expression of checked genes

Lus10015490 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.