Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24330 256 / 2e-83 Protein of unknown function (DUF1682) (.1) AT5G49945 246 / 2e-79 Protein of unknown function (DUF1682) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019957 [exp] 307 / 3e-107 AT4G24330 306 / 3e-103 Protein of unknown function (DUF1682) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G223000 [exp] 249 / 5e-81 AT4G24330 479 / 8e-167 Protein of unknown function (DUF1682) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07946 [flax] [poplar] DUF1682 Protein of unknown function (DUF1682)
Representative CDS sequence Show only first row Show all	>Lus10015491 pacid=23173603 polypeptide=Lus10015491 locus=Lus10015491.g ID=Lus10015491.BGIv1.0 annot-version=v1.0 ATGGTGGTTCCCTGTAAGGATGAGATCACTTTCCAAGTTTATATGAATGACAATGCCATGGACCAAGTGATTTTCGCAATGGCCAAGAAGAAAGCTGCCA AAGCTATGCAGAAGGAGGTTAGGGATTTGCAGAGGTTTGCTGGCCTTCTGCCTCATCAGGCCCATGTGAAGAAATGGGTCATTGAGGATCTCGGAGTTGT TTCTGAATCTAAGGAGGTTGCTGGGGACTTGATCACTGATGCTGTCCTTGAACAGGTCTTTGGAGAAAAAGCTTTTGGAAAGTTTGGAAAGGGTTTCATC TCGATGCATTTCTCAGACCAACATCCTGGTGCACACAAGAAAATGCTGTTGTTCAAGTTTGCTCTACCCGATGCTAGCAATATGGCGGATATGACCAGAT TGGTGGCTTTGGTACCTTACTACATTGATCTGATTGGCCGATACAAGTTGAGTCCGCAGGCACGGTCTAAAACGGAGGCAGCGAGAAACAAAGCTGCACA AGAAGCATTCAAAGAACTTCAAAATGCAAGACAGGAAGCGTTGTTGAGAAAGAAGGCGGAGAGGAAGGAGGAAGCTGAATCGAAACTTAGCGCAGAGGCC ATCCGCAGAAAACAGGAGAAGGATCGTGCTCGTCAGACCAAGAAAGCAATGCCCAAGATGAAGATGTCACGCAGATGA
AA sequence Show only first row Show all	>Lus10015491 pacid=23173603 polypeptide=Lus10015491 locus=Lus10015491.g ID=Lus10015491.BGIv1.0 annot-version=v1.0 MVVPCKDEITFQVYMNDNAMDQVIFAMAKKKAAKAMQKEVRDLQRFAGLLPHQAHVKKWVIEDLGVVSESKEVAGDLITDAVLEQVFGEKAFGKFGKGFI SMHFSDQHPGAHKKMLLFKFALPDASNMADMTRLVALVPYYIDLIGRYKLSPQARSKTEAARNKAAQEAFKELQNARQEALLRKKAERKEEAESKLSAEA IRRKQEKDRARQTKKAMPKMKMSRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24330			Protein of unknown function (D...		Lus10015491 [exp]	0	1
AT5G13890			Family of unknown function (DU...		Lus10012588 [exp]	4.5	0.9236
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10029954 [exp]	5.5	0.9063
AT2G42210		ATOEP16-3	Mitochondrial import inner mem...		Lus10012024 [exp]	7.3	0.9164
AT5G06660			Protein of unknown function DU...		Lus10029308 [exp]	7.9	0.9218
AT5G11280			unknown protein		Lus10002030 [exp]	9.2	0.9128
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10037958 [exp]	9.9	0.9041
AT5G52840			NADH-ubiquinone oxidoreductase...		Lus10027539 [exp]	10.0	0.9110
AT3G28720			unknown protein		Lus10015362 [exp]	11.0	0.8962
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10017397 [exp]	13.9	0.8922
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10023181 [exp]	15.4	0.8902

Compare expression of checked genes

Lus10015491 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.