Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30550 96 / 6e-25 GGP3 gamma-glutamyl peptidase 3, Class I glutamine amidotransferase-like superfamily protein (.1) AT2G23970 92 / 1e-23 Class I glutamine amidotransferase-like superfamily protein (.1) AT4G30540 84 / 2e-20 Class I glutamine amidotransferase-like superfamily protein (.1) AT2G23960 77 / 6e-18 Class I glutamine amidotransferase-like superfamily protein (.1) AT4G30530 77 / 1e-17 GGP1 gamma-glutamyl peptidase 1, Class I glutamine amidotransferase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019964 [exp] 192 / 2e-62 AT2G23970 279 / 6e-95 Class I glutamine amidotransferase-like superfamily protein (.1) Lus10014635 [exp] 94 / 3e-24 AT2G23970 233 / 8e-77 Class I glutamine amidotransferase-like superfamily protein (.1) Lus10033793 [exp] 94 / 4e-24 AT2G23970 239 / 4e-79 Class I glutamine amidotransferase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G102000 [exp] 159 / 7e-50 AT2G23970 308 / 1e-106 Class I glutamine amidotransferase-like superfamily protein (.1) Potri.009G078200 [exp] 104 / 2e-28 AT2G23970 211 / 1e-68 Class I glutamine amidotransferase-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015493 pacid=23173638 polypeptide=Lus10015493 locus=Lus10015493.g ID=Lus10015493.BGIv1.0 annot-version=v1.0 ATGGAGGATACTTCAATGTGTTCGTTGCTGCGTTTGGTGAAGGAGGAGGAGGAGGAGGAGAGAGATGGGATTTGTTCAGAGTTGTGGATGGTGAGTTCCC TCACATGGAAGATCTTCACAAGGAAAGCAATGAGAGGATGGGATATTGGGTTAAGAAGGGTGAGGATTGTGAAGGATTTGAGACTATGGAGTTTCTTAGA AGATGTGAAGCAAATGCCACCATCTCTATCAATCATTGAGGGCCACCAAGATCAAGTGTGGGAGGTTCCATCTGGAGCAGAGGTGATTGCATTCTCAGAC ACAACTGGTGTGGAGATGTTCACCATTGGAGATCACATCCTGGGGATTCAAGGCCATCCTGAATACACTAACGACATTCTTTGTAGCCTCATTGACCGCC TTTTTCAAGCCAACTGCATCGAGGTACCTTAA
AA sequence Show only first row Show all	>Lus10015493 pacid=23173638 polypeptide=Lus10015493 locus=Lus10015493.g ID=Lus10015493.BGIv1.0 annot-version=v1.0 MEDTSMCSLLRLVKEEEEEERDGICSELWMVSSLTWKIFTRKAMRGWDIGLRRVRIVKDLRLWSFLEDVKQMPPSLSIIEGHQDQVWEVPSGAEVIAFSD TTGVEMFTIGDHILGIQGHPEYTNDILCSLIDRLFQANCIEVP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30550		GGP3	gamma-glutamyl peptidase 3, Cl...		Lus10015493 [exp]	0	1
					Lus10017955 [exp]	1.0	0.9939
AT2G24960			unknown protein		Lus10042421 [exp]	1.4	0.9913
					Lus10039496 [exp]	2.4	0.9894
					Lus10009927 [exp]	2.8	0.9846
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10008669 [exp]	3.0	0.9724
AT5G05340			Peroxidase superfamily protein...		Lus10030149 [exp]	3.5	0.9764
					Lus10018837 [exp]	4.5	0.9800
AT1G33400		TPR9	tetratricopeptide repeat 9, Te...		Lus10042464 [exp]	4.5	0.9680
AT1G62960		ACS10	ACC synthase 10 (.1)		Lus10011796 [exp]	6.0	0.9354
AT3G28540			P-loop containing nucleoside t...		Lus10007270 [exp]	6.3	0.9726

Compare expression of checked genes

Lus10015493 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.