Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23810 318 / 5e-110 TET8 tetraspanin8 (.1) AT4G28050 305 / 6e-105 TET7 tetraspanin7 (.1) AT4G30430 271 / 2e-91 TET9 tetraspanin9 (.1) AT3G45600 219 / 1e-70 TET3 tetraspanin3 (.1) AT3G12090 197 / 5e-62 TET6 tetraspanin6 (.1) AT2G19580 184 / 3e-57 TET2 tetraspanin2 (.1) AT5G60220 184 / 1e-56 TET4 tetraspanin4 (.1) AT1G18520 181 / 3e-56 TET11 tetraspanin11 (.1) AT5G46700 180 / 1e-55 TRN2, TET1 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) AT4G23410 177 / 1e-54 TET5 tetraspanin5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019965 [exp] 456 / 3e-164 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10008891 [exp] 415 / 4e-148 AT2G23810 377 / 5e-133 tetraspanin8 (.1) Lus10023216 [exp] 411 / 1e-146 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10038473 [exp] 239 / 1e-78 AT3G45600 446 / 9e-160 tetraspanin3 (.1) Lus10008563 [exp] 220 / 3e-71 AT2G19580 411 / 1e-146 tetraspanin2 (.1) Lus10017336 [exp] 206 / 1e-65 AT5G46700 389 / 5e-138 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Lus10001668 [exp] 204 / 6e-65 AT5G46700 384 / 8e-136 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Lus10023338 [exp] 182 / 6e-57 AT3G45600 347 / 1e-121 tetraspanin3 (.1) Lus10007998 [exp] 177 / 2e-54 AT2G19580 369 / 6e-130 tetraspanin2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G177900 [exp] 360 / 3e-126 AT2G23810 317 / 4e-109 tetraspanin8 (.1) Potri.018G099800 [exp] 358 / 1e-125 AT2G23810 322 / 3e-111 tetraspanin8 (.1) Potri.009G015100 [exp] 241 / 3e-79 AT3G45600 388 / 7e-137 tetraspanin3 (.1) Potri.003G093000 [exp] 214 / 4e-69 AT5G46700 369 / 4e-130 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Potri.006G150400 [exp] 211 / 1e-67 AT2G19580 367 / 5e-129 tetraspanin2 (.1) Potri.010G220300 [exp] 211 / 1e-67 AT3G12090 399 / 2e-141 tetraspanin6 (.1) Potri.008G041600 [exp] 210 / 4e-67 AT3G12090 397 / 2e-140 tetraspanin6 (.1) Potri.015G055700 [exp] 204 / 5e-65 AT1G18520 196 / 6e-62 tetraspanin11 (.1) Potri.001G141400 [exp] 196 / 1e-61 AT5G46700 367 / 3e-129 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Potri.001G107200 [exp] 178 / 5e-55 AT1G63260 416 / 1e-148 tetraspanin10 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0347 [flax] [poplar] Tetraspannin PF00335 [flax] [poplar] Tetraspanin Tetraspanin family
Representative CDS sequence Show only first row Show all	>Lus10015494 pacid=23173655 polypeptide=Lus10015494 locus=Lus10015494.g ID=Lus10015494.BGIv1.0 annot-version=v1.0 ATGTTCCGCCTAAGCAACAACCTCGTCGGAATCCTCAATTTCATCACCTTCCTCCTCTCCATCCCCATAATCTGGGCCGGCGCGTGGCTCCGCAACCATG GAAGCTCCGAGTGCGACCGCTTCCTCGACACGCCTATCATCGTCATCGGAGTCTTCCTCATGCTTGTCTCCTTGGCCGGACTCGTCGGAGCTTGCTGCAA GAACTCCTGCTTGCTTTGGATCTACCTCGTAGTCATGTTCCTCCTCATCGTCCTCCTCTTCTGCTTCACCATCTTCGCCTTCATTGTCACCAACAAAGGA GCCGGCCAAGCGCTGTCCAACCGCGGCTACAAGGAGTATAGATTGGGAGGATACTCCGATTGGTTGCAGAAGAGAGTGACTAGCACCAAGAACTGGAATA AGATCCGGAGTTGTTTGATTGACGCTAAAGTTTGCTCCAAGTTCAACGAGACTTATCTCTCTGATTCCGTCGAGAAGTTCTACACTGAGAGATTGTCTTC TCTTCAGTCTGGATGCTGCAAGCCAGCGGACGAATGTGGATTAACCTACGTGAACCCAACAACATGGACCGGGACCAGCACGAATTCGACCAACACAGAC TGTAATGCTTGGGGTAACCAGCCAGATGTTCTTTGCTTCAACTGCAACTCGTGCAAGGCTGGTCTGCTTGACAACATCAAACGTGACTGGAAGCGTGTAG CGACCGTGAACATCGTCTTCCTGGTGTTCCTCATCATAGTCTACTCTGTGGGTTGCTGTGCTTTCAGGAACAACAGGAGGGACAACTCTTACTCTTCCGG GTTCAAGGCATAG
AA sequence Show only first row Show all	>Lus10015494 pacid=23173655 polypeptide=Lus10015494 locus=Lus10015494.g ID=Lus10015494.BGIv1.0 annot-version=v1.0 MFRLSNNLVGILNFITFLLSIPIIWAGAWLRNHGSSECDRFLDTPIIVIGVFLMLVSLAGLVGACCKNSCLLWIYLVVMFLLIVLLFCFTIFAFIVTNKG AGQALSNRGYKEYRLGGYSDWLQKRVTSTKNWNKIRSCLIDAKVCSKFNETYLSDSVEKFYTERLSSLQSGCCKPADECGLTYVNPTTWTGTSTNSTNTD CNAWGNQPDVLCFNCNSCKAGLLDNIKRDWKRVATVNIVFLVFLIIVYSVGCCAFRNNRRDNSYSSGFKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23810		TET8	tetraspanin8 (.1)		Lus10015494 [exp]	0	1
AT2G23810		TET8	tetraspanin8 (.1)		Lus10019965 [exp]	1.0	0.9901
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Lus10032919 [exp]	2.0	0.9647
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10035840 [exp]	2.4	0.9666
AT4G17230	GRAS	SCL13	SCARECROW-like 13 (.1)		Lus10017554 [exp]	3.0	0.9655
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10041660 [exp]	3.9	0.9621
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Lus10028970 [exp]	5.5	0.9518
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10023099 [exp]	5.9	0.9479
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Lus10015587 [exp]	6.3	0.9475
AT4G00300			fringe-related protein (.1.2)		Lus10018823 [exp]	7.3	0.9449
AT1G12610	AP2_ERF	DDF1, DREB1F, F...	DWARF AND DELAYED FLOWERING 1,...		Lus10029601 [exp]	7.3	0.9317

Compare expression of checked genes

Lus10015494 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.