Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67170 128 / 3e-34 unknown protein AT5G61920 110 / 1e-28 unknown protein AT3G14750 83 / 6e-18 unknown protein AT1G55170 75 / 3e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019966 [exp] 480 / 3e-173 AT1G67170 137 / 3e-38 unknown protein Lus10035371 [exp] 117 / 8e-31 AT1G67170 284 / 2e-95 unknown protein Lus10030976 [exp] 119 / 2e-30 AT1G67170 294 / 1e-96 unknown protein Lus10013698 [exp] 89 / 3e-20 AT3G14750 298 / 3e-100 unknown protein Lus10005563 [exp] 84 / 3e-18 AT3G14750 288 / 2e-96 unknown protein Lus10038143 [exp] 80 / 6e-17 AT3G14750 275 / 1e-91 unknown protein Lus10015629 [exp] 74 / 5e-15 AT1G55170 236 / 2e-77 unknown protein Lus10037647 [exp] 74 / 6e-15 AT1G55170 233 / 6e-76 unknown protein Lus10015628 [exp] 71 / 4e-14 AT1G55170 211 / 3e-68 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G178100 [exp] 210 / 2e-66 AT5G61920 155 / 3e-46 unknown protein Potri.017G109700 [exp] 127 / 2e-33 AT1G67170 282 / 3e-91 unknown protein Potri.003G037900 [exp] 80 / 3e-17 AT1G55170 259 / 2e-86 unknown protein Potri.001G382700 [exp] 71 / 7e-14 AT3G14750 297 / 6e-100 unknown protein Potri.009G076700 [exp] 61 / 1e-10 AT3G14750 173 / 8e-52 unknown protein Potri.001G281400 [exp] 60 / 4e-10 AT2G30120 161 / 4e-48 unknown protein Potri.018G100100 [exp] 54 / 5e-09 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015495 pacid=23173602 polypeptide=Lus10015495 locus=Lus10015495.g ID=Lus10015495.BGIv1.0 annot-version=v1.0 ATGGCTGGAGGAGGGCGTCGCCCTCATACATTAGAGGGACGTTCTGTTCAAACTGCAGGAGTTTCGGGACCATTACCGAGTGGTATACGGGTGTTGGATC CTACCTCTCATCATCCAGATCGTCTGGAAACCAAAGTTGCTACTCAGGCTGCCGAAATCGACAAACTGGCTAAAGATAATCGGCTATTGGTTGCCGGTAA TGCAGCATTAAGGGAGGATCTGATTGCTGTTCAGAAAGAGGCACAGCAACTCAAAGCGCACATTAGGAGTATTCAAACAGAGAGTGATATCCAGATTAGG GTTTTGTTGGAGAAGATTGCGAAAAGGGATGCAGCAGACATTAGGGCTGCTGAGAATGTGAAGGAAGATCTTAAACAGGCGCTTACAGAGGCACGGAACT TCGTCAAGGATAGACCCGAGTTAATTGATAAAATTCGGCAGGCCTCCCGTGAATTGCAAATGGCCCGGTCAGAGGTTAAGGGTTTACCCGATTTGCAAGC TGAGCTTGATGATTTGAGGCAGGAATACAATAGACTAAGGGATTCTTTCAAGTATGAGAAAGGGTTTAACATAGCTAAAGTAGAGGAGCTACAGTCGACG GAGAAGAACCTTATTGAGATGGCAAGACAAGTGGATACCATATATGCCGAAATCTTGAACACCGAGAAGCGAGCCAATGGTGTGTTGCTTGGCATATCTC ATTTGCTTCTTACTTTCCTAACTGTTAATCTATATTTTGACATTGCTGCAACTCCAGCAGCAGTCGCTTACACTCAGCCTCCACAAGGAGCTGGTGGTTC TTATGTTGATCCATATGGAAGATCTCTTGCTCATCAAAGTAGTGTTGCAGCTGACGACGGGATGATGTCGAATGGGAATTGTAGTGATCCGTCGCCTGGC AAGAAATGA
AA sequence Show only first row Show all	>Lus10015495 pacid=23173602 polypeptide=Lus10015495 locus=Lus10015495.g ID=Lus10015495.BGIv1.0 annot-version=v1.0 MAGGGRRPHTLEGRSVQTAGVSGPLPSGIRVLDPTSHHPDRLETKVATQAAEIDKLAKDNRLLVAGNAALREDLIAVQKEAQQLKAHIRSIQTESDIQIR VLLEKIAKRDAADIRAAENVKEDLKQALTEARNFVKDRPELIDKIRQASRELQMARSEVKGLPDLQAELDDLRQEYNRLRDSFKYEKGFNIAKVEELQST EKNLIEMARQVDTIYAEILNTEKRANGVLLGISHLLLTFLTVNLYFDIAATPAAVAYTQPPQGAGGSYVDPYGRSLAHQSSVAADDGMMSNGNCSDPSPG KK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67170			unknown protein		Lus10015495 [exp]	0	1
AT1G67170			unknown protein		Lus10019966 [exp]	1.0	0.9265
AT3G47990		SIS3	SUGAR-INSENSITIVE 3 (.1)		Lus10042126 [exp]	1.7	0.8920
AT1G24450		NFD2	NUCLEAR FUSION DEFECTIVE 2, Ri...		Lus10002362 [exp]	2.0	0.9012
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10037999 [exp]	2.6	0.8688
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Lus10022566 [exp]	11.2	0.8700
AT5G44200		ATCBP20, CBP20	CAP-binding protein 20 (.1.2)		Lus10039887 [exp]	18.0	0.8469
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Lus10020054 [exp]	18.3	0.8494
AT4G39100		SHL1	short life, PHD finger family ...		Lus10041960 [exp]	22.0	0.8649
AT4G31720		STG1, TAFII15, ...	TBP-ASSOCIATED FACTOR 10, SALT...		Lus10034375 [exp]	22.1	0.8786
AT3G55920			Cyclophilin-like peptidyl-prol...		Lus10030408 [exp]	24.5	0.8573

Compare expression of checked genes

Lus10015495 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.