Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30440 759 / 0 GAE1 UDP-D-glucuronate 4-epimerase 1 (.1) AT4G00110 573 / 0 GAE3 UDP-D-glucuronate 4-epimerase 3 (.1) AT1G02000 572 / 0 GAE2 UDP-D-glucuronate 4-epimerase 2 (.1) AT2G45310 555 / 0 GAE4 UDP-D-glucuronate 4-epimerase 4 (.1) AT3G23820 525 / 0 GAE6 UDP-D-glucuronate 4-epimerase 6 (.1) AT4G12250 517 / 0 GAE5 UDP-D-glucuronate 4-epimerase 5 (.1) AT4G23920 99 / 7e-23 ATUGE2, UGE2 UDP-GLC 4-EPIMERASE 2, UDP-D-glucose/UDP-D-galactose 4-epimerase 2 (.1) AT1G30620 96 / 3e-21 MURUS4, HSR8, UXE1, MUR4 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G10960 94 / 5e-21 UGE5 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) AT1G12780 91 / 8e-20 ATUGE1, UGE1 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008893 [exp] 787 / 0 AT4G30440 767 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10019967 [exp] 763 / 0 AT4G30440 688 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10015876 [exp] 577 / 0 AT4G00110 751 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10000787 [exp] 570 / 0 AT4G00110 731 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10030281 [exp] 566 / 0 AT4G00110 753 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10009288 [exp] 565 / 0 AT4G00110 704 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10016640 [exp] 511 / 2e-180 AT3G23820 746 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Lus10022552 [exp] 507 / 1e-178 AT3G23820 742 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Lus10032391 [exp] 504 / 7e-178 AT1G02000 620 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G100400 [exp] 758 / 0 AT4G30440 771 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.006G178500 [exp] 739 / 0 AT4G30440 757 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.014G068400 [exp] 592 / 0 AT1G02000 714 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.002G146500 [exp] 585 / 0 AT1G02000 724 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.001G320000 [exp] 543 / 0 AT3G23820 714 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.017G059100 [exp] 539 / 0 AT3G23820 724 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.003G114600 [exp] 506 / 1e-178 AT4G12250 587 / 0.0 UDP-D-glucuronate 4-epimerase 5 (.1) Potri.012G128200 [exp] 503 / 4e-178 AT1G02000 544 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.002G116750 [exp] 169 / 3e-51 AT2G45310 209 / 6e-67 UDP-D-glucuronate 4-epimerase 4 (.1) Potri.011G156100 [exp] 100 / 7e-23 AT1G30620 712 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10015496 pacid=23173646 polypeptide=Lus10015496 locus=Lus10015496.g ID=Lus10015496.BGIv1.0 annot-version=v1.0 ATGCCATCGTTAGAGGAGGAGCTTTTCCCATCTACTCCGGGAAAATTCAAGATTGACCACCACCGTAGCCACCGCCAATTCCACCGATGCTTCTCCTCCA CCAGCACGATGTTCCTCTGGGCTCTGTTCCTCATCGCCCTAACAGCATCCTATCTTAGCTTCCAGAGCTTCGTCGATTCGGGAAGCCGCTACTTCTCCGC CTCATGGGGCGGAATCCAGTGGGAGAGGCAGGTTCGTAACTCCGCCCAGATCCACCGGTCCGGGGGGATGTCGGTGCTCGTCACCGGCGCCGCCGGATTC GTCGGCACTCACGTCTCCTTAGCGTTGAAAAAGAGAGGAGACGGCGTGGTAGGGATTGACAATTTCAACAACTACTACGACCCGTCTTTGAAAGAAGCCC GTAAATCGATGGTGGAAGCCCAAGGAATTTTCATAGTCACCGGGGACATAAACGACGCCAAGCTGCTGAAAAAACTATTCGACGTCGTTCCGTTCACCCA CGTGATGCACCTGGCAGCCCAGGCCGGTGTTCGTTACGCGATGGAGAATCCTCATTCTTATGTGCATTCCAACATCGCCGGATTGGTAACGCTCCTCGAG ATCTGCAAATCAGCGGATCCCCAGCCAGCTATCGTATGGGCATCGTCCAGCTCCGTTTACGGGCTCAACGAGAAGGTTCCCTTTTCGGAATCGGACCGAA CCGATCAGCCAGCGAGTCTGTACGCTGCGACAAAGAAGGCCGGTGAGGAAATTACTCATACTTATAATCACATTTACGGGCTGTCGATTACGGGGTTAAG ATTCTTTACGGTTTACGGGCCGTGGGGTCGACCGGACATGGCATACTTCTCGTTTACGAGGAATATTTTGCAAGGGAAGCCGATTACAGTTTACCGGGGG AAGAACCGGGTCGATTTGGCCCGGGATTTCACCTACATTGACGATATCGTGAAGGGGTGTTTGGGGTCGTTGGATACTTCAGGAAAGAGTACCGGTTCCG GTGGGAAGAAGACTGGTCCAGCAAAGTACCGGATTTTCAATTTGGGGAATACGTCGCCGGTGACGGTGCCGAATTTGGTGGGGATATTGGAGAGGCATTT GAAGGTGAAAGCGAAGAAGAAGCTTGTGGATATGCCTGGAAATGGCGACGTTCCCTTTACTCACGCCAATACTAGTTACGCGAGGAAGGAGTTCGGTTAT AAACCGACCACTGATCTTCAAACCGGGTTGAAGAAGTTTGTCAAGTGGTATCTTTCCTACTACGGCTATAATAACGGGAAATCTGTAAATTAA
AA sequence Show only first row Show all	>Lus10015496 pacid=23173646 polypeptide=Lus10015496 locus=Lus10015496.g ID=Lus10015496.BGIv1.0 annot-version=v1.0 MPSLEEELFPSTPGKFKIDHHRSHRQFHRCFSSTSTMFLWALFLIALTASYLSFQSFVDSGSRYFSASWGGIQWERQVRNSAQIHRSGGMSVLVTGAAGF VGTHVSLALKKRGDGVVGIDNFNNYYDPSLKEARKSMVEAQGIFIVTGDINDAKLLKKLFDVVPFTHVMHLAAQAGVRYAMENPHSYVHSNIAGLVTLLE ICKSADPQPAIVWASSSSVYGLNEKVPFSESDRTDQPASLYAATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRG KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSGGKKTGPAKYRIFNLGNTSPVTVPNLVGILERHLKVKAKKKLVDMPGNGDVPFTHANTSYARKEFGY KPTTDLQTGLKKFVKWYLSYYGYNNGKSVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10015496 [exp]	0	1
AT2G27260			Late embryogenesis abundant (L...		Lus10005216 [exp]	1.0	0.9449
AT5G17850			Sodium/calcium exchanger famil...		Lus10020318 [exp]	1.4	0.9265
AT3G07790			DGCR14-related (.1)		Lus10006367 [exp]	2.4	0.9253
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10014758 [exp]	3.2	0.9078
AT5G35090			unknown protein		Lus10001931 [exp]	3.5	0.9055
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10008893 [exp]	4.0	0.9108
AT5G01710			methyltransferases (.1)		Lus10014232 [exp]	5.5	0.8921
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10025885 [exp]	5.7	0.8915
AT5G11070			unknown protein		Lus10001943 [exp]	6.0	0.8801
AT4G38660			Pathogenesis-related thaumatin...		Lus10041899 [exp]	6.9	0.8687

Compare expression of checked genes

Lus10015496 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.