Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23820 314 / 1e-108 Metal-dependent phosphohydrolase (.1.2) AT1G26160 286 / 7e-98 Metal-dependent phosphohydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019968 [exp] 384 / 1e-136 AT2G23820 332 / 1e-115 Metal-dependent phosphohydrolase (.1.2) Lus10017897 [exp] 276 / 9e-94 AT1G26160 329 / 2e-114 Metal-dependent phosphohydrolase (.1) Lus10035072 [exp] 262 / 1e-87 AT1G26160 319 / 5e-110 Metal-dependent phosphohydrolase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G178600 [exp] 327 / 4e-114 AT2G23820 305 / 2e-105 Metal-dependent phosphohydrolase (.1.2) Potri.008G111700 [exp] 283 / 1e-96 AT1G26160 352 / 9e-124 Metal-dependent phosphohydrolase (.1) Potri.010G133001 [exp] 72 / 4e-16 AT1G26160 84 / 2e-21 Metal-dependent phosphohydrolase (.1) Potri.010G133101 [exp] 68 / 4e-15 AT1G26160 82 / 8e-21 Metal-dependent phosphohydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0237 [flax] [poplar] HD_PDEase PF01966 [flax] [poplar] HD HD domain
Representative CDS sequence Show only first row Show all	>Lus10015497 pacid=23173639 polypeptide=Lus10015497 locus=Lus10015497.g ID=Lus10015497.BGIv1.0 annot-version=v1.0 ATGAGGATCATAGCAACTCGAGCGGCAGTGCTCTGTAAATCGAGCTCACTCCTCTTCCTCACCTCATCCTCCTCCTTTTCTGCTCCCACGACCCGCTTCC GGTTCAACTCGTTCGCCGCTTCCTCTTCCCCGTCTCACTGCACTCACCACCGCATGGCAACCGCCGAGACTACTCCATCCGACGCCACCAACGCCGCCGC GTCCCCTTCTTCAGCCATTGATTTCCTCTCCCTCTGCCACCGCCTCAAGACCACGAAGAGGGCTGGATGGGTGAAGAGGGATGTTAGGGATCCGGAATCG ATAGCGGATCATATGTACAGAATGGGATTGATGGGTTTGATTTTGCCGGATATTCCTGGCATCGATCGTGACAAGTGTGTGAAGATGGCAATTGTTCATG ACATAGCTGAAGCTATAGTTGGTGACATTACCCCATCAGATGGAGTGCCGAAGGAGGAGAAGAGCCGGAAAGAGGCTGAAGCGTTGGATCATATGTGCAA GTTGTTAGGTGGAGGATCAAGAGCTAAGGAGATAGAGCAGTTGTGGAAAGAGTATGAAGATAATTCTTCCCCAGAAGCCAAATTAGTGAAGGACTTTGAC AAGGTGGAGATGATTCTTCAGGCTTTGGAATATGAAAATGAACAAGGGAAAGATTTGGAGGAGTTCTTCCAGTCCACTGCTGGGAAATTCCAGACAGATG TAGGCAAAGCTTGGGCCAAGGAAGTAGCATCCAGAAGGAAAGCCAAATAG
AA sequence Show only first row Show all	>Lus10015497 pacid=23173639 polypeptide=Lus10015497 locus=Lus10015497.g ID=Lus10015497.BGIv1.0 annot-version=v1.0 MRIIATRAAVLCKSSSLLFLTSSSSFSAPTTRFRFNSFAASSSPSHCTHHRMATAETTPSDATNAAASPSSAIDFLSLCHRLKTTKRAGWVKRDVRDPES IADHMYRMGLMGLILPDIPGIDRDKCVKMAIVHDIAEAIVGDITPSDGVPKEEKSRKEAEALDHMCKLLGGGSRAKEIEQLWKEYEDNSSPEAKLVKDFD KVEMILQALEYENEQGKDLEEFFQSTAGKFQTDVGKAWAKEVASRRKAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23820			Metal-dependent phosphohydrola...		Lus10015497 [exp]	0	1
AT3G26710		CCB1	cofactor assembly of complex C...		Lus10035119 [exp]	5.0	0.8993
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Lus10003822 [exp]	5.8	0.8528
AT4G28030			Acyl-CoA N-acyltransferases (N...		Lus10015504 [exp]	7.7	0.8733
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10026638 [exp]	9.5	0.8608
AT3G53470			unknown protein		Lus10014016 [exp]	10.2	0.8958
AT1G58170			Disease resistance-responsive ...		Lus10042488 [exp]	10.7	0.8389
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10017605 [exp]	15.8	0.8467
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10013435 [exp]	16.3	0.8699
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Lus10035346 [exp]	17.2	0.8893
AT5G59250			Major facilitator superfamily ...		Lus10016505 [exp]	17.7	0.8622

Compare expression of checked genes

Lus10015497 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.