Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28040 140 / 7e-41 nodulin MtN21 /EamA-like transporter family protein (.1.2.3.4.5) AT4G30420 131 / 4e-37 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G75500 95 / 3e-23 WAT1 Walls Are Thin 1 (.1.2) AT3G18200 91 / 1e-22 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT3G30340 87 / 1e-20 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G09380 85 / 1e-19 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 81 / 3e-18 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 81 / 3e-18 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G13670 80 / 6e-18 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 79 / 8e-18 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019970 [exp] 226 / 2e-74 AT4G30420 351 / 5e-120 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10019969 [exp] 204 / 9e-66 AT4G28040 334 / 8e-114 nodulin MtN21 /EamA-like transporter family protein (.1.2.3.4.5) Lus10023211 [exp] 126 / 3e-35 AT4G30420 378 / 1e-130 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10038959 [exp] 100 / 1e-25 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10041765 [exp] 99 / 1e-25 AT4G39220 250 / 5e-85 Rer1 family protein (.1) Lus10027251 [exp] 99 / 2e-24 AT3G18200 493 / 2e-175 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10010647 [exp] 97 / 2e-24 AT1G75500 492 / 6e-175 Walls Are Thin 1 (.1.2) Lus10024301 [exp] 97 / 4e-24 AT1G75500 575 / 0.0 Walls Are Thin 1 (.1.2) Lus10028317 [exp] 94 / 6e-24 AT4G39220 254 / 8e-87 Rer1 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G177700 [exp] 157 / 3e-47 AT4G30420 353 / 1e-120 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.018G099500 [exp] 140 / 8e-41 AT4G30420 402 / 7e-140 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G177600 [exp] 139 / 5e-40 AT4G30420 375 / 4e-129 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G177800 [exp] 129 / 2e-36 AT4G30420 320 / 2e-107 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G233600 [exp] 99 / 7e-25 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.011G148400 [exp] 94 / 3e-23 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G307900 [exp] 89 / 3e-21 AT1G25270 254 / 2e-82 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G182700 [exp] 88 / 5e-21 AT4G01440 298 / 2e-99 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.015G042900 [exp] 88 / 5e-21 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.010G209200 [exp] 88 / 7e-21 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10015498 pacid=23173579 polypeptide=Lus10015498 locus=Lus10015498.g ID=Lus10015498.BGIv1.0 annot-version=v1.0 ATGGCGGAACCGGGAAGTGAAGGCGTCCCCCAGCTCGTCAAGTGGAGCAGCGACTTCTCCGGGGTGTTCCAGCACTATCTCGACAAATCGGTGCCTCAGC CGATGCTCGGGTGGCTAGGAACCCTTTCGGTGGCGATTCTCTACGTTCCAATAGCGGCAACATGCCCTGATCTGATATACTCATCAGCTTGGTTGTGCTT CCTGGCTACCATTCAATCAATGACAATAGCTTTGTTCCTGGATAAGGATTACTCGTCTTGGAAACTCAATTCCATCTTTCAATTCGGTTGTTGTTTATAT GAGGGAGTAGCTTTGGCACTGTCTTTCTTGGGGCAAGCTTGGTGTGTTGGTGAGAGAGGCCCAGTATTCCCTGCAATTTTCAACCCTCTTTGCGCAGTCA TTACTGCAATCTTTGCTGCAATTTTCCTCCAAGAACAAACTTACTTGGGAGGGTTGATCGGAGCTGCGATGGCGATAACGGGTTTGTACCTTGTGTTGTG GGGGGAAAACCAATGA
AA sequence Show only first row Show all	>Lus10015498 pacid=23173579 polypeptide=Lus10015498 locus=Lus10015498.g ID=Lus10015498.BGIv1.0 annot-version=v1.0 MAEPGSEGVPQLVKWSSDFSGVFQHYLDKSVPQPMLGWLGTLSVAILYVPIAATCPDLIYSSAWLCFLATIQSMTIALFLDKDYSSWKLNSIFQFGCCLY EGVALALSFLGQAWCVGERGPVFPAIFNPLCAVITAIFAAIFLQEQTYLGGLIGAAMAITGLYLVLWGENQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28040			nodulin MtN21 /EamA-like trans...		Lus10015498 [exp]	0	1
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Lus10041381 [exp]	1.4	0.7304
AT5G55980			serine-rich protein-related (....		Lus10008880 [exp]	10.0	0.6821
AT5G02280			SNARE-like superfamily protein...		Lus10023793 [exp]	10.2	0.6212
AT2G02120		PDF2.1, LCR70	LOW-MOLECULAR-WEIGHT CYSTEINE-...		Lus10039622 [exp]	16.4	0.6512
AT4G38380			MATE efflux family protein (.1...		Lus10023944 [exp]	17.8	0.6697
AT3G19230			Leucine-rich repeat (LRR) fami...		Lus10002405 [exp]	18.0	0.6407
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006310 [exp]	26.9	0.6473
AT4G14590		EMB2739	embryo defective 2739 (.1)		Lus10009705 [exp]	34.2	0.6380
AT3G29410		AtTPS25	Terpenoid cyclases/Protein pre...		Lus10038330 [exp]	34.7	0.6393
					Lus10010847 [exp]	38.4	0.6327

Compare expression of checked genes

Lus10015498 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.