Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57800 844 / 0 CER3, FLP1, YRE, WAX2 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) AT1G02205 362 / 3e-117 CER1 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) AT2G37700 321 / 3e-101 Fatty acid hydroxylase superfamily (.1.2) AT1G02190 311 / 2e-97 Fatty acid hydroxylase superfamily (.1.2) AT4G22753 47 / 2e-05 ATSMO1-3, ATSMO1, SMO1-3 sterol 4-alpha methyl oxidase 1-3 (.1.2) AT4G22756 46 / 5e-05 ATSMO1-2, ATSMO1, SMO1-2 sterol C4-methyl oxidase 1-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019971 [exp] 1254 / 0 AT5G57800 879 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) Lus10023210 [exp] 1058 / 0 AT5G57800 882 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) Lus10008895 [exp] 1056 / 0 AT5G57800 885 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) Lus10019510 [exp] 299 / 8e-93 AT1G02205 763 / 0.0 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Lus10011473 [exp] 130 / 2e-33 AT1G02205 310 / 7e-102 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Lus10011472 [exp] 129 / 6e-33 AT1G02205 303 / 5e-99 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Lus10023110 [exp] 103 / 1e-23 AT1G02205 261 / 6e-81 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Lus10023109 [exp] 42 / 0.0001 AT1G02205 87 / 3e-21 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G099400 [exp] 964 / 0 AT5G57800 851 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) Potri.006G177500 [exp] 956 / 0 AT5G57800 890 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) Potri.014G152900 [exp] 333 / 4e-106 AT1G02205 789 / 0.0 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Potri.014G152600 [exp] 327 / 1e-103 AT1G02205 788 / 0.0 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Potri.014G152301 [exp] 327 / 2e-103 AT1G02205 790 / 0.0 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Potri.014G180300 [exp] 312 / 9e-98 AT1G02205 793 / 0.0 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12076 [flax] [poplar] Wax2_C WAX2 C-terminal domain PF04116 [flax] [poplar] FA_hydroxylase Fatty acid hydroxylase superfamily
Representative CDS sequence Show only first row Show all	>Lus10015499 pacid=23173616 polypeptide=Lus10015499 locus=Lus10015499.g ID=Lus10015499.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCTTTGTCTGACTGGCCATGGGAGAACCTTGGAGTGTACAAGTATTTGCTGTATGGACCTGTGCTGGGGAAAGTAGTGTACTCGAGATATC AAGGTGGGTACTTGAAGCAAGATTGGTGTTTTTACTTGGTAATCATTTGGTACCTCAGGATGTGTGTCCACATACTGTGGAGCACTTTTGTCAATATGCT CTTCTTCACCAAAAGCCTCAGGATCAACAAACATGGCTATGATTTCAAGCAGATTGATAAAGAATGGGATTGGGACAATTTCCTGATCCTGCAATCAATG ATTGCATCAGTGACATGTTTGATGTTTCCATCTTTCTTGGAACTTCCTGTATGGAACACAAAAGGAGTGGTCTGCATTTTGGTGCTACATGTATTAATCT CAGAGCCACTTTACTATTGGGTTCATAGATGCTTCCACAAAACCTCCTTGTTCACCAATTACCATTCAATTCACCACTCATCCGCAGTTCTCCATCCTTA CACAGGATCGCATTTGTCATTTCTGGAGCATCTGGTGCAAGCAACAATCATTGGGATCCCAATATTTGGATCTGCAATTCTTGGATATGGATCGTTGGTT CCAATGGTTGGCTATGTTTTGGTGTTTGATTTCCTGAGGTGTATGGTCCATTCCAACACTGAAGTTATTCCTCACCAGCTCTTCCAGACTCTCCCATTCC TCAAATACCTCATTTCAACACCAACGTATAATAGTCTGCATCATGCTGAAATGGGAACCAATTTCTGCCTGTTTATGCCAATCTTTGATGCAATTTGGAA GACCCTTAACAGCAATTCATGGGAGCTTCACAAGAAGCAGCGTGCAAAAGCAGGGAAGTATGGCAGAGTTGCTGACTTCGTGTTCTTGGCACACGTTGTC GATTTATCTTCTTCAATGCATTCGCCCTACGTTTTCCGGACAGTTTCTTCGTTGCCGTACAAGTTCCGAGCATTCTTGATCCCTTACTGGCCAACAACTT TCATGGTGATGCTAATGATGTGGGCTAAAGCCAGGGTATTCATCCAATCCTTCTACACCCTCAGGGGCAAGCTTCACGAGACTTGGGTTGTCCCTAGGTT TGGTTTCCAGTACTTCTTGCCATTTGCCAAGGAAGGAATCAATAAAAGAATTGATGAGGCGATTCTCAAAGCTGATAGACTTGGAGTTAAGGTCCTGAGT CTTGCTGCACTCAATAAGAATGAAGCTCTGAATGGAGGTGGAACGTTGTTTGTAAACAAGCATCCTGATCTTCGAGTCCGAATCGTCCATGGCAACACGT TGACTGCAGCAGTGATTCTTAACGAGATTGGAGATGAAATTGAAGAAGTCTTCCTAACAGGAGCTACTTCCAAGCTTGGAAGAGCAATTGCTCTTTACCT TTGTAGGCGTAGAGTTCGAGTTCTCATGCTGACGCTATCTACCGAGAGATTTCAGAAGATTCAGAAAGAAGCACCAGTGGAATGCCAGAGTTACTTGGTG CAAGTTACTAAGTATCAGGCTGCTAGAAATTGCAAGACATGGATAGTGGGCAAGTGGATCACACCAAGAGAGCAAAATTGGGCCCCTTCAGGAGCCCATT TCCATCAGTTTGTTGTCCCGCCCATTTTGGCATTCAGGAAGGATTGCACCTATGGGGACCTTGCTGCCATGAGATTGCCTCATGATGTTGAAGGTCTTGG ATGTTGTGAGTACACGATGGACCGCGGAGTGGTGCACGCGTGCCACGCGGGAGGGGTGGTGCACTTCCTAGAAGGGTGGAAGCACCACGAAGTTGGAGCG ATAGATGTCGACAGGATTGATCTTGTGTGGAATGCTGCAATGAAGCATGGATTGAAGCCTGTCTCCAACATGAACAAATCGAAACAAACATAG
AA sequence Show only first row Show all	>Lus10015499 pacid=23173616 polypeptide=Lus10015499 locus=Lus10015499.g ID=Lus10015499.BGIv1.0 annot-version=v1.0 MAAALSDWPWENLGVYKYLLYGPVLGKVVYSRYQGGYLKQDWCFYLVIIWYLRMCVHILWSTFVNMLFFTKSLRINKHGYDFKQIDKEWDWDNFLILQSM IASVTCLMFPSFLELPVWNTKGVVCILVLHVLISEPLYYWVHRCFHKTSLFTNYHSIHHSSAVLHPYTGSHLSFLEHLVQATIIGIPIFGSAILGYGSLV PMVGYVLVFDFLRCMVHSNTEVIPHQLFQTLPFLKYLISTPTYNSLHHAEMGTNFCLFMPIFDAIWKTLNSNSWELHKKQRAKAGKYGRVADFVFLAHVV DLSSSMHSPYVFRTVSSLPYKFRAFLIPYWPTTFMVMLMMWAKARVFIQSFYTLRGKLHETWVVPRFGFQYFLPFAKEGINKRIDEAILKADRLGVKVLS LAALNKNEALNGGGTLFVNKHPDLRVRIVHGNTLTAAVILNEIGDEIEEVFLTGATSKLGRAIALYLCRRRVRVLMLTLSTERFQKIQKEAPVECQSYLV QVTKYQAARNCKTWIVGKWITPREQNWAPSGAHFHQFVVPPILAFRKDCTYGDLAAMRLPHDVEGLGCCEYTMDRGVVHACHAGGVVHFLEGWKHHEVGA IDVDRIDLVWNAAMKHGLKPVSNMNKSKQT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10015499 [exp]	0	1
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10023210 [exp]	4.0	0.9299
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10008895 [exp]	6.2	0.9266
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10031540 [exp]	6.5	0.9022
AT2G30300			Major facilitator superfamily ...		Lus10026422 [exp]	7.5	0.9140
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10037598 [exp]	8.9	0.8947
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10006856 [exp]	8.9	0.8984
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10041878 [exp]	9.2	0.9011
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10015999 [exp]	9.4	0.8891
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Lus10006249 [exp]	9.7	0.9022
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10015138 [exp]	11.0	0.9041

Compare expression of checked genes

Lus10015499 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.