Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30410 108 / 5e-30 sequence-specific DNA binding transcription factors (.1.2) AT5G57780 100 / 8e-27 P1R1 P1R1, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G099100 [exp] 142 / 1e-42 AT4G30410 135 / 1e-40 sequence-specific DNA binding transcription factors (.1.2) Potri.006G177000 [exp] 136 / 1e-40 AT4G30410 142 / 2e-43 sequence-specific DNA binding transcription factors (.1.2) Potri.005G201500 [exp] 46 / 2e-06 AT3G58850 82 / 4e-21 phy rapidly regulated 2 (.1) Potri.002G060100 [exp] 40 / 0.0003 AT3G58850 80 / 4e-20 phy rapidly regulated 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015500 pacid=23173627 polypeptide=Lus10015500 locus=Lus10015500.g ID=Lus10015500.BGIv1.0 annot-version=v1.0 ATGCGTTCTCCAACCTCATTGAAGCGAGAATTCCTAAAGAAATGGATACTAGCTCTTCAACTATGTAACCGCACCAACAAGTCGAAAAGTAGTAGTACTG TCACGGAGAGGAAGAAGACGATCAAACTATCAGCCGAAATAGCAATGGCCACGGCAAGAAACGGCGCCACGTGTTGGAGCCGCGCAATCATCGCCAATGC GGCCAAGTCGGAGGAGGCCAAACCCTTCCTCAGCCTCCTCGTCGGCACGCAACAACAGCAGCAGTGTGCTGCGAGTTCCGGGGCCGGAAGGCCGAAGAAG AAGCGGATGGTGACGACGAGGTGCAAGAAGATAGTAAAGAGGAGCTGCCGGAGAAGAAGCATTAACGTGGTGGCGGCGGCGGCTCCGGAAAAGGTGGCGA AATGGATGGCAAAGAGGAGGAGGAAGAAGTCGACGGAGGTGCTGAAGAGGATAGTGCCAGGAGGGGAGTTGATTGGCGATGACGTGGCGTTGATTCTTGA AACCCTAGACTACATGGTGTCACTCCGAGCTCAGGTCCAAGTTATGAGATGTCTTGTTCGAGCTGCAGCTGGCTCTGGTTTTCAGGATATTGTTTGA
AA sequence Show only first row Show all	>Lus10015500 pacid=23173627 polypeptide=Lus10015500 locus=Lus10015500.g ID=Lus10015500.BGIv1.0 annot-version=v1.0 MRSPTSLKREFLKKWILALQLCNRTNKSKSSSTVTERKKTIKLSAEIAMATARNGATCWSRAIIANAAKSEEAKPFLSLLVGTQQQQQCAASSGAGRPKK KRMVTTRCKKIVKRSCRRRSINVVAAAAPEKVAKWMAKRRRKKSTEVLKRIVPGGELIGDDVALILETLDYMVSLRAQVQVMRCLVRAAAGSGFQDIV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30410			sequence-specific DNA binding ...		Lus10015500 [exp]	0	1
AT5G20230		SAG14, ATBCB	SENESCENCE ASSOCIATED GENE 14,...		Lus10025752 [exp]	1.0	0.8321
AT2G40300		ATFER4	ferritin 4 (.1)		Lus10007523 [exp]	2.4	0.8000
					Lus10035524 [exp]	6.5	0.7987
AT1G68320	MYB	BW62C, BW62B, A...	myb domain protein 62 (.1)		Lus10034338 [exp]	10.6	0.7020
AT3G61880		CYP78A9	cytochrome p450 78a9 (.1.2)		Lus10017334 [exp]	13.5	0.7250
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10005592 [exp]	20.1	0.7017
AT5G11090			serine-rich protein-related (....		Lus10038101 [exp]	22.5	0.6534
AT3G45070			P-loop containing nucleoside t...		Lus10034079 [exp]	23.1	0.7668
AT5G01880			RING/U-box superfamily protein...		Lus10025145 [exp]	23.7	0.6347
AT2G44650		CHL-CPN10	chloroplast chaperonin 10 (.1)		Lus10043345 [exp]	24.4	0.7134

Compare expression of checked genes

Lus10015500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.