Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57770 309 / 1e-102 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019972 [exp] 646 / 0 AT5G57770 360 / 1e-122 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G099000 [exp] 369 / 2e-126 AT5G57770 338 / 7e-114 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05703 [flax] [poplar] Auxin_canalis Auxin canalisation CL0266 [flax] [poplar] PH PF08458 [flax] [poplar] PH_2 Plant pleckstrin homology-like region
Representative CDS sequence Show only first row Show all	>Lus10015501 pacid=23173643 polypeptide=Lus10015501 locus=Lus10015501.g ID=Lus10015501.BGIv1.0 annot-version=v1.0 ATGGCAACAACAGCGACAGTTCCCTCTGAGGCACATCCTGAGACAATGGATTTCCTCTCAAGAGCTTGGTGTGATTTTGCAGTTCAAACCTTTGATCCAC CTCAACACTTTCAAGACCGCAACTCCCTCCTTCTCCTTGACAACAAACCAGCCACTAAATTCGATAGAAGTCTTGCGATATCTCCGGCTTTCTTGAATAT GGAGCAGAAAGGCATGAAGATGGATCATCCAGAGCTCACACCTCTACCGCCTTGGAAGTCTAACGATTTGAAGTCATGGATATGGATGCAACAAGCAATG CATCCTGAACTAAACTACAGTAAGAAGAAATGGGTGCAATGGAAGATGGGTCCATTTAAGATGACATCAATCAAGAAATGGGTGAAGGAGATGAAATTGA GGAGAAAAGAAGAGGGGAGGCTAGCAAGAGCTGAAGTCCACGCAGCAATGTCAATGGCTGGGCTAGCAGCTGCTCTGGCTGCAATAGCTGCTGTTGATAA ATCGGAAAAGGACATCAATTACCGAGACGATGCAGTGGCTTCTGCTGCAGCTTTGGTGGCCGCACATTGTGCGAAAATCGCAGAATCAATGGGAGCAAAG AAGGAGCAACTGAGTAGTGTTATAGGCTCCGCCATGAATGGTGGTGCAAGTGACATCCTTACTCTCACAGCTGCTGCCACTACATCACTAAAAGGGGCAG CTACACTAAAGGCTAGAACAGAGTGCAAGAACAGTTTGATGAATGGAAGTGTTCCAGTTCTCCCAATTGAGGACAGTCATGAACTTGACCTTGACTTCAA CAAGAACAGATCAATGCTTTCCTCAGGCACAGAGCTTCATGTTGAAACACCAGATGGAGATTTTCGAGTGAGGTGGATCTCCGTCATCCAAGATAGCCAA GCCAAGGTTGTCCTAAGAATGAAAAAGCTAAATCTGCTCAAAACCAAAATGGAAAGTATAGTAATGGACATTCATGCTGAGTTGTACAAAGACCCATATG AAGCTGCACAAGAGACTGATACATGTTACCTGATCGTGTTATCGACAAATCAAGGGATGATTAAGCTCGACATGGGAGATGATTATGATCGTTACAAGAC TTGGGCTGCAACCATTACTCATATGCTAGCTCTCTCATCTTCCTTGAGTAAATATGAGCTCCAATTCTAA
AA sequence Show only first row Show all	>Lus10015501 pacid=23173643 polypeptide=Lus10015501 locus=Lus10015501.g ID=Lus10015501.BGIv1.0 annot-version=v1.0 MATTATVPSEAHPETMDFLSRAWCDFAVQTFDPPQHFQDRNSLLLLDNKPATKFDRSLAISPAFLNMEQKGMKMDHPELTPLPPWKSNDLKSWIWMQQAM HPELNYSKKKWVQWKMGPFKMTSIKKWVKEMKLRRKEEGRLARAEVHAAMSMAGLAAALAAIAAVDKSEKDINYRDDAVASAAALVAAHCAKIAESMGAK KEQLSSVIGSAMNGGASDILTLTAAATTSLKGAATLKARTECKNSLMNGSVPVLPIEDSHELDLDFNKNRSMLSSGTELHVETPDGDFRVRWISVIQDSQ AKVVLRMKKLNLLKTKMESIVMDIHAELYKDPYEAAQETDTCYLIVLSTNQGMIKLDMGDDYDRYKTWAATITHMLALSSSLSKYELQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57770			Plant protein of unknown funct...		Lus10015501 [exp]	0	1
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10004346 [exp]	2.8	0.9290
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10032282 [exp]	4.4	0.9343
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10002663 [exp]	9.2	0.9145
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10002885 [exp]	9.5	0.9029
AT2G12646			PLATZ transcription factor fam...		Lus10008814 [exp]	12.8	0.9180
AT5G59070			UDP-Glycosyltransferase superf...		Lus10016475 [exp]	14.1	0.9014
AT3G10120			unknown protein		Lus10027167 [exp]	15.2	0.9097
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025068 [exp]	16.1	0.9088
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10002894 [exp]	17.5	0.8960
AT5G67150			HXXXD-type acyl-transferase fa...		Lus10038415 [exp]	19.2	0.8278

Compare expression of checked genes

Lus10015501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.