Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18650 215 / 1e-65 MEE16 maternal effect embryo arrest 16, RING/U-box superfamily protein (.1) AT4G30400 209 / 5e-63 RING/U-box superfamily protein (.1) AT5G40250 168 / 2e-48 RING/U-box superfamily protein (.1) AT5G57750 137 / 3e-38 RING/U-box superfamily protein (.1) AT1G23980 139 / 2e-37 RING/U-box superfamily protein (.1) AT3G48030 126 / 5e-33 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1) AT5G05810 100 / 1e-23 ATL43 RING/U-box superfamily protein (.1) AT3G60220 100 / 1e-23 ATL4 TOXICOS EN LEVADURA 4 (.1) AT4G40070 96 / 4e-22 RING/U-box superfamily protein (.1) AT5G17600 95 / 2e-21 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019973 [exp] 646 / 0 AT4G30400 252 / 4e-80 RING/U-box superfamily protein (.1) Lus10014526 [exp] 163 / 2e-46 AT5G40250 423 / 6e-148 RING/U-box superfamily protein (.1) Lus10032161 [exp] 163 / 2e-46 AT5G40250 413 / 7e-144 RING/U-box superfamily protein (.1) Lus10012987 [exp] 161 / 9e-46 AT5G40250 302 / 7e-101 RING/U-box superfamily protein (.1) Lus10029178 [exp] 160 / 3e-45 AT5G40250 297 / 1e-98 RING/U-box superfamily protein (.1) Lus10023206 [exp] 134 / 8e-37 AT4G30400 91 / 7e-21 RING/U-box superfamily protein (.1) Lus10008899 [exp] 133 / 2e-36 AT4G30400 95 / 3e-22 RING/U-box superfamily protein (.1) Lus10012745 [exp] 98 / 1e-22 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10023617 [exp] 98 / 2e-22 AT5G05810 219 / 1e-68 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G098500 [exp] 300 / 1e-97 AT4G30400 339 / 7e-112 RING/U-box superfamily protein (.1) Potri.006G176700 [exp] 258 / 1e-81 AT4G30400 304 / 3e-98 RING/U-box superfamily protein (.1) Potri.017G072300 [exp] 166 / 2e-47 AT5G40250 372 / 7e-128 RING/U-box superfamily protein (.1) Potri.001G351466 [exp] 163 / 2e-46 AT5G40250 355 / 2e-121 RING/U-box superfamily protein (.1) Potri.015G073600 [exp] 142 / 2e-38 AT5G40250 259 / 1e-83 RING/U-box superfamily protein (.1) Potri.012G078200 [exp] 138 / 4e-37 AT5G40250 241 / 1e-76 RING/U-box superfamily protein (.1) Potri.005G160900 [exp] 97 / 5e-22 AT1G22500 203 / 5e-61 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) Potri.015G056800 [exp] 97 / 5e-22 AT5G05810 263 / 8e-85 RING/U-box superfamily protein (.1) Potri.013G025800 [exp] 96 / 8e-22 AT3G05200 261 / 9e-84 RING/U-box superfamily protein (.1) Potri.005G036800 [exp] 95 / 2e-21 AT3G05200 261 / 7e-84 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10015502 pacid=23173633 polypeptide=Lus10015502 locus=Lus10015502.g ID=Lus10015502.BGIv1.0 annot-version=v1.0 ATGACTTGGGTTTCCGTCCAAATCAAAGAAAGTTCAATCCTTTCCACAACCGATCCACCGTTCCCCGCTGCCGCTTCCGGCGTCGACGGCGGGGCATTCA ACTTGGAGAACAAGGTGAGCCCAAGCATTCTCCTCATAATCATAATCCTCGCAATAGTCTTCTTCATCTCCGGCCTTCTCCACCTCTTAGTCCGCTTCGT AATCCGCCCGCCGCCCCATCGCGACGAATTCGACGGCAGCGCAGCCGCCGTCACCACCGCCTTGCAGGGTCAACTCCAACAGCTCTTCCACCTCCACGAC TCCGGCGTCGACCAATCGTTCATCGACACTCTACCCATCTTTCTTTACAAATCCATCCTCGTCGGACCCGGGTCGGAAAAGTCCGACCCGTTCGACTGCG CCGTGTGCTTGTCGGAGTTCGAGCCGGAGGACAAGCTCCGGTTACTACCCAAATGCAGCCACGCTTTCCACATGGACTGCATTGACACGTGGCTTCTCTC CCACTCCACTTGCCCTCTCTGCCGATCTTCTCTCAACAATGGAACCAACAACTCTTCGAACAACGCTCCTCCGATTGTTCTGGTTCTCGAGTCCGGAAGT CAGAGCTCCGGCGAATTAGTCAACGATATGGAAAGCAGCAATCTTGGCCGGCGGAGTGGCTCCGAGTTGGGCTCGTTTCGAGCTGAATTTCCAGATCCGG AAAGGGTGGTCCGGGTGAAATTGGGAAAGTTCAGAAACGTTGAAAACAGGGGAAATGCGGGGGAAGAAATTAGCAATGTGGATGTGAGGAGGTGCTACTC GATGGGGTCGTTTCAGTACGTTATGGACGATAACTCTTCGATCCAAGTTCCGATTACGAGGATTCCGCCGGCGACGAGGAGGAAGAAGTCTGGTTGTCGC CGCGGGGCAATGTCGGTGTGTGGGATCGAATCGGCGAGGGAATTTGGAGGATTTGACGGCGGCAACATTATTTCAGAGAAACAAGAGAGCTCGGAGGCAG GGGATTTGGGTTCGAAACGGAGCGCCGTTTCATTTAGGGTTGTGAGGAGCTGCGAGTTAGGGGTTTGTTGTGATGAGGGAAGTCGGGAATTGGACAAGAC GCCGTCTTTTGCGAGGAGGACTCTGCTCTGGCTTTCCGGCCGACAGAGTAATAAGGTTGTTCACTCTAACTTTACCTCCAATGTTTAG
AA sequence Show only first row Show all	>Lus10015502 pacid=23173633 polypeptide=Lus10015502 locus=Lus10015502.g ID=Lus10015502.BGIv1.0 annot-version=v1.0 MTWVSVQIKESSILSTTDPPFPAAASGVDGGAFNLENKVSPSILLIIIILAIVFFISGLLHLLVRFVIRPPPHRDEFDGSAAAVTTALQGQLQQLFHLHD SGVDQSFIDTLPIFLYKSILVGPGSEKSDPFDCAVCLSEFEPEDKLRLLPKCSHAFHMDCIDTWLLSHSTCPLCRSSLNNGTNNSSNNAPPIVLVLESGS QSSGELVNDMESSNLGRRSGSELGSFRAEFPDPERVVRVKLGKFRNVENRGNAGEEISNVDVRRCYSMGSFQYVMDDNSSIQVPITRIPPATRRKKSGCR RGAMSVCGIESAREFGGFDGGNIISEKQESSEAGDLGSKRSAVSFRVVRSCELGVCCDEGSRELDKTPSFARRTLLWLSGRQSNKVVHSNFTSNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30400			RING/U-box superfamily protein...		Lus10015502 [exp]	0	1
AT3G22540			Protein of unknown function (D...		Lus10006107 [exp]	2.8	0.7279
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10002374 [exp]	11.7	0.7081
AT3G24080			KRR1 family protein (.1.2)		Lus10025633 [exp]	33.7	0.6714
AT2G06925		ATSPLA2-ALPHA, ...	PHOSPHOLIPASE A2-ALPHA, Phosph...		Lus10011960 [exp]	35.5	0.6764
AT4G25780			CAP (Cysteine-rich secretory p...		Lus10006981 [exp]	40.2	0.6637
AT1G20650		ASG5	ALTERED SEED GERMINATION 5, Pr...		Lus10030741 [exp]	41.0	0.6721
AT3G61490			Pectin lyase-like superfamily ...		Lus10007922 [exp]	44.8	0.6382
AT5G57770			Plant protein of unknown funct...		Lus10019972 [exp]	45.2	0.6099
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10028654 [exp]	46.9	0.6251
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10035859 [exp]	47.0	0.6650

Compare expression of checked genes

Lus10015502 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.