Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57740 584 / 0 XBAT32 XB3 ortholog 2 in Arabidopsis thaliana (.1) AT5G07270 439 / 4e-149 XBAT33 XB3 ortholog 3 in Arabidopsis thaliana (.1) AT2G28840 112 / 4e-26 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) AT5G02620 73 / 3e-13 ATANK1, ANK1 ankyrin-like1 (.1) AT1G07710 71 / 1e-12 Ankyrin repeat family protein (.1) AT3G12360 71 / 2e-12 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT5G14230 68 / 1e-11 unknown protein AT2G31820 64 / 1e-10 Ankyrin repeat family protein (.1) AT3G04710 64 / 2e-10 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT4G19150 60 / 7e-10 Ankyrin repeat family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019974 [exp] 894 / 0 AT5G57740 630 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Lus10005754 [exp] 418 / 7e-141 AT5G07270 753 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Lus10027441 [exp] 387 / 9e-129 AT5G07270 719 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Lus10016561 [exp] 130 / 2e-32 AT2G28840 640 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Lus10040829 [exp] 84 / 4e-17 AT2G28840 546 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Lus10003308 [exp] 70 / 3e-12 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10003748 [exp] 66 / 4e-11 AT1G07710 83 / 6e-18 Ankyrin repeat family protein (.1) Lus10041537 [exp] 65 / 8e-11 AT5G51160 350 / 2e-117 Ankyrin repeat family protein (.1) Lus10036033 [exp] 61 / 8e-11 AT5G12320 186 / 2e-61 ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G098400 [exp] 735 / 0 AT5G57740 611 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Potri.006G176600 [exp] 704 / 0 AT5G57740 597 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Potri.012G139100 [exp] 451 / 1e-153 AT5G07270 782 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Potri.015G141400 [exp] 450 / 2e-153 AT5G07270 795 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Potri.001G238800 [exp] 139 / 8e-36 AT2G28840 657 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Potri.009G030000 [exp] 113 / 1e-26 AT2G28840 619 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Potri.002G213200 [exp] 75 / 5e-14 AT2G03430 96 / 2e-22 Ankyrin repeat family protein (.1) Potri.013G062000 [exp] 75 / 6e-14 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.010G185200 [exp] 72 / 3e-13 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.005G069300 [exp] 71 / 8e-13 AT1G07710 695 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10015503 pacid=23173604 polypeptide=Lus10015503 locus=Lus10015503.g ID=Lus10015503.BGIv1.0 annot-version=v1.0 ATGAAGTTTCTTAGCTTGATGGGCAACTCTTTTGGATGTTCTGCATCTGGGGAGAGATTGGTATCCGCTGCTAGAGATGGTGATCTTCAAGAAGCTAAGG CCTTGTTGGAATGGAATCCAAGGCTCGCCAGATACTCAACTTTTGGAGTCAGGAATTCCCCTCTTCATTATTCTGCAGCTCAAGGACACCATGAGATAGT TTCTCTATTGCTTGAGTCTGGAGTTGATATCAATCTGAGAAACTACCGTGGCCAGACTGCATTAATGCAAGCTTGTCAACATGGCCATTGGGAGGTTGTT CTGACTCTGATGCTTTTTCGAGCGAATATTCACAGAGCGGATTATCTTAATGGTGGTACCGCCTTGCATTTGGCTGCATTGAATGGTCACACCAGATGCA TACGACTACTTCTAGCTGATTACATCCCTAGTATTCCTGATTGCTGGGATTCATTAAGAAACAGATCTAGCTGTGATGAAATGAAGCAGTCCGAATTTGA TGAAGGGGCTCTCCATGAGGTTATCAACAAACCTGCCGATGGAGGAATCACTGCTCTCCACATGGCTGCACTGAACGGACATGTCGAAACTGTTCAGTTG CTTTTGGATCTTGGAGCTGTTGTTTCTGAGGTTACTGTTGAAGATGGAACCACAATTGATCTGATAGGTGCCGGAAGCACAGCTCTTCATTATGCTGCTT GTGGGGGAAACTTACAATGCTGCCAGATGTTGATTTCCAACGGTGCCAGTCTCACTGCTGAAAATTCAAATGGTTGGACTGCATTAATGGTTGCCCGGTC ATGGCATAGAAATGAACTGGAGGAAATCCTTACCCAACAACGTCCAGAACAGCAGCATCAGCAGACGTGTTCTTCATCATATCTCTCGCTCCCCCTCATG AGCATCGTCAAGATTGCTCGGGAATGTGGATGGAGGAACAACGATTTGCTGCCAACATGCCAAGATCCGTGCGTTGTGTGCTTGGAAGCAACCTGCAGAG TTGCCGCGGCAGGGTGCAACCATGAGTTCTGCACACGATGTGCATTGTACCTATGTTCAACAATCTGCAGCGTGAAAACCTCTCAAGGTCCAGCAGGGTC AGTTCCATGCCCACTATGCCGCCATGGCATAGTTTCCTTCGTCAAACTTGCAGGGACAAAGCCAGTGTCCAAGTCCATGGGCAGAACAAGTTTGTCGCTG CCATTCTGCGCATGCTCATCAGAGGAGCTAGAGCTAGAACCCAGCTTGCTGAATCAACCATTGTGCAAGCCGGAATTCCATTGCACGAGTTTCCCATCTC GTTCGTCCTCATTCCGTTCCTTGAGCTGCCAGAAGTTCCCGTTCAATGCCAGCCGGTGTATTGGATCCCCAGATACCAATCCGTCCTTAGTCCCTTCCTC TGTCGTGGATCCTAGCATCCGTGAGCAGCTAGTGAGATGCTCAAGGTCGAGGCTTAGGAAATTGGGTTCGAACCATGATCGCAAAAGGTCTTGGATTTCG ACTCTCAATCAGCATCCTTCACCTCCACCTCCTCTGCACCTGCAGTCTCCTCCTTACTACTACCGCCATCAACTCCTTGTGGCCGACGCCACCTCCTTGC CTCAATCGCCTCCTCTTTGCCACCGTCTCTACCTCCTCCGTCGTTGCATCTTCAGCCGCCGGGACTCCCGAATCTTATCAAACTTCAGGCTCCGCACCGT GAAGAATAGAGTGACAGCCCTGGAGAAGTTCGAGTGGAGAGCGCTGGAGCACGAGAGTTAG
AA sequence Show only first row Show all	>Lus10015503 pacid=23173604 polypeptide=Lus10015503 locus=Lus10015503.g ID=Lus10015503.BGIv1.0 annot-version=v1.0 MKFLSLMGNSFGCSASGERLVSAARDGDLQEAKALLEWNPRLARYSTFGVRNSPLHYSAAQGHHEIVSLLLESGVDINLRNYRGQTALMQACQHGHWEVV LTLMLFRANIHRADYLNGGTALHLAALNGHTRCIRLLLADYIPSIPDCWDSLRNRSSCDEMKQSEFDEGALHEVINKPADGGITALHMAALNGHVETVQL LLDLGAVVSEVTVEDGTTIDLIGAGSTALHYAACGGNLQCCQMLISNGASLTAENSNGWTALMVARSWHRNELEEILTQQRPEQQHQQTCSSSYLSLPLM SIVKIARECGWRNNDLLPTCQDPCVVCLEATCRVAAAGCNHEFCTRCALYLCSTICSVKTSQGPAGSVPCPLCRHGIVSFVKLAGTKPVSKSMGRTSLSL PFCACSSEELELEPSLLNQPLCKPEFHCTSFPSRSSSFRSLSCQKFPFNASRCIGSPDTNPSLVPSSVVDPSIREQLVRCSRSRLRKLGSNHDRKRSWIS TLNQHPSPPPPLHLQSPPYYYRHQLLVADATSLPQSPPLCHRLYLLRRCIFSRRDSRILSNFRLRTVKNRVTALEKFEWRALEHES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57740		XBAT32	XB3 ortholog 2 in Arabidopsis ...		Lus10015503 [exp]	0	1
AT2G23520			Pyridoxal phosphate (PLP)-depe...		Lus10016752 [exp]	2.8	0.9145
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10026913 [exp]	4.7	0.9169
AT3G24200			FAD/NAD(P)-binding oxidoreduct...		Lus10011740 [exp]	6.0	0.9000
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Lus10004125 [exp]	15.2	0.8926
AT2G42130			Plastid-lipid associated prote...		Lus10016263 [exp]	15.3	0.8920
AT2G32970			unknown protein		Lus10035309 [exp]	18.8	0.8843
AT1G11340			S-locus lectin protein kinase ...		Lus10013244 [exp]	23.6	0.8970
AT5G36930			Disease resistance protein (TI...		Lus10020534 [exp]	24.5	0.8701
AT3G48480			Cysteine proteinases superfami...		Lus10035097 [exp]	24.5	0.8717
AT4G03115			Mitochondrial substrate carrie...		Lus10024769 [exp]	25.5	0.8854

Compare expression of checked genes

Lus10015503 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.