Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02920 211 / 2e-66 ATRPA32B Replication protein A, subunit RPA32 (.1.2) AT2G24490 149 / 4e-42 ATRPA32A, RPA2, ATRPA2, ROR1 SUPPRESSOR OF ROS1, replicon protein A2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019976 [exp] 449 / 3e-159 AT3G02920 258 / 8e-86 Replication protein A, subunit RPA32 (.1.2) Lus10000160 [exp] 188 / 1e-59 ND / Lus10026954 [exp] 145 / 7e-41 AT2G24490 252 / 7e-84 SUPPRESSOR OF ROS1, replicon protein A2 (.1.2) Lus10019977 [exp] 137 / 1e-39 AT3G18990 41 / 7e-05 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10020154 [exp] 134 / 8e-37 AT2G24490 243 / 3e-80 SUPPRESSOR OF ROS1, replicon protein A2 (.1.2) Lus10026953 [exp] 99 / 2e-22 AT5G10630 327 / 1e-104 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) Lus10040408 [exp] 92 / 3e-22 ND 41 / 8e-05 Lus10032159 [exp] 97 / 5e-22 AT3G18990 93 / 8e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10014528 [exp] 94 / 5e-21 AT3G18990 95 / 1e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G091700 [exp] 264 / 5e-87 AT3G02920 246 / 3e-81 Replication protein A, subunit RPA32 (.1.2) Potri.006G167600 [exp] 253 / 1e-82 AT3G02920 219 / 9e-71 Replication protein A, subunit RPA32 (.1.2) Potri.006G275700 [exp] 148 / 5e-42 AT2G24490 251 / 3e-83 SUPPRESSOR OF ROS1, replicon protein A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF01336 [flax] [poplar] tRNA_anti-codon OB-fold nucleic acid binding domain CL0123 [flax] [poplar] HTH PF08784 [flax] [poplar] RPA_C Replication protein A C terminal
Representative CDS sequence Show only first row Show all	>Lus10015505 pacid=23173642 polypeptide=Lus10015505 locus=Lus10015505.g ID=Lus10015505.BGIv1.0 annot-version=v1.0 ATGTACGCAGTAGCAGGAGGAGGAGGAGGAAGCGACTTCGATGGTGGCTCATCACTCTTTAATGGTGGCGGTTTCATGCCTCCCGAGACCACTCAAACTC ACGATTTCGCCGGCACCTCTTCTTCCTCCAACAAGAAGAGTGGTCTCAAATGCCTGCTGCCACTTACTGTGAAGCAGATAAGCAAGCTAGTGACTTCTGA TGACTCCAATTTCACTTGTGATGGTGTTGACGTTGTTATTGTTGGGAGGGTATGTAAGAAGGAAGACAAAGTGAGTGAGTACACATGCTTGATTGATGAC GGCACAGGGCAGATTGAATGTTCCAGATGGATTCAGGAATCCCTTGATACTGAAGAAGTTGAAGGAATCTCAGTTGGATCATATGTGCGTGTACATGGAC ACTTTAGGGGTTTGCAAGGCAGAAGGTTCATAAATGTCTTCTCTATTAGGCCTGTCACCGATTGCAACGAGGTTACAAGCCACTTCATCGAGTGCATATA TGTCCACTTCTACAACACCAAGATTCGAGGTGCCGGTGCCACTCCCCAGGCACAGCTGCCAAATCCCACCGGACCAAGCAACAACCTTCCAAGAGGGATG CAACCTGCACCGCCTGTCCAGTCTGCAGCTTATCATGGCGGTGATCGGATGACCAACCTTGGGGAAAAGATATTGAATCTAATGCAGCAACAACCTTACG TGGCTAGCGAAGATGGAATACACAGAGACATCATTGCTCGTCAGCTACAAGTTCCAATGCATGCGATCATAACGTTGACTACGTTTCTGATCTTTCATTG TTTGGTTTCTGTTTCCTCTGATTCTGTGGTGCTAAATTGTTTCTTTTCCTTCTCGAAATCGCAGAACTTTTTAGCCAAGATCACAGACAGCAGCCTCATT AATGAAGATTTGTCGAAGGCAACTCTACGTGTGTTCTACAAAGAGGAGGTGGACGAGAGGGAGGCTACGCTGTTCGAGGCGAAACGGGATCGGAGGAAGT ATATATCGGGGTGGATGGCGTTCTGCACGAAACATAAGTTGATAGTGGGAGACGTCTGTTTGCTCGAACGTGTTGACCCCGAAACTAACCTCTTTATTGT TCGCATATTCCATGCGGGTCGTGGTTGA
AA sequence Show only first row Show all	>Lus10015505 pacid=23173642 polypeptide=Lus10015505 locus=Lus10015505.g ID=Lus10015505.BGIv1.0 annot-version=v1.0 MYAVAGGGGGSDFDGGSSLFNGGGFMPPETTQTHDFAGTSSSSNKKSGLKCLLPLTVKQISKLVTSDDSNFTCDGVDVVIVGRVCKKEDKVSEYTCLIDD GTGQIECSRWIQESLDTEEVEGISVGSYVRVHGHFRGLQGRRFINVFSIRPVTDCNEVTSHFIECIYVHFYNTKIRGAGATPQAQLPNPTGPSNNLPRGM QPAPPVQSAAYHGGDRMTNLGEKILNLMQQQPYVASEDGIHRDIIARQLQVPMHAIITLTTFLIFHCLVSVSSDSVVLNCFFSFSKSQNFLAKITDSSLI NEDLSKATLRVFYKEEVDEREATLFEAKRDRRKYISGWMAFCTKHKLIVGDVCLLERVDPETNLFIVRIFHAGRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02920		ATRPA32B	Replication protein A, subunit...		Lus10015505 [exp]	0	1
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10027357 [exp]	2.6	0.7731
AT1G79800		AtENODL7	early nodulin-like protein 7 (...		Lus10011433 [exp]	6.9	0.7201
AT3G58060			Cation efflux family protein (...		Lus10029300 [exp]	30.2	0.6698
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10012953 [exp]	31.6	0.7051
AT5G04550			Protein of unknown function (D...		Lus10002840 [exp]	33.7	0.6273
					Lus10038978 [exp]	38.7	0.7042
AT5G20690			Leucine-rich repeat protein ki...		Lus10005175 [exp]	41.0	0.6392
AT4G15910		ATDI21	drought-induced 21 (.1)		Lus10037497 [exp]	46.5	0.6455
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029377 [exp]	64.7	0.6541
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10020834 [exp]	71.2	0.6058

Compare expression of checked genes

Lus10015505 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.