Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18670 102 / 3e-28 RING/U-box superfamily protein (.1) AT4G30370 88 / 9e-23 RING/U-box superfamily protein (.1) AT4G09100 66 / 2e-14 RING/U-box superfamily protein (.1) AT5G42200 63 / 4e-13 RING/U-box superfamily protein (.1) AT2G27940 63 / 8e-13 RING/U-box superfamily protein (.1) AT3G16720 62 / 3e-12 ATL2 TOXICOS EN LEVADURA 2 (.1) AT3G48030 62 / 3e-12 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1) AT3G62690 61 / 4e-12 ATL5 AtL5 (.1) AT4G28890 60 / 2e-11 RING/U-box superfamily protein (.1) AT2G42360 59 / 4e-11 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019979 [exp] 218 / 3e-74 AT2G18670 113 / 5e-32 RING/U-box superfamily protein (.1) Lus10008797 [exp] 70 / 4e-15 AT5G40250 77 / 2e-16 RING/U-box superfamily protein (.1) Lus10022223 [exp] 68 / 1e-14 AT1G23980 81 / 2e-17 RING/U-box superfamily protein (.1) Lus10012975 [exp] 66 / 3e-13 AT2G20030 291 / 2e-95 RING/U-box superfamily protein (.1) Lus10034953 [exp] 63 / 3e-12 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1) Lus10016163 [exp] 61 / 4e-12 AT2G27940 133 / 1e-38 RING/U-box superfamily protein (.1) Lus10042277 [exp] 61 / 1e-11 AT3G16720 104 / 2e-26 TOXICOS EN LEVADURA 2 (.1) Lus10034551 [exp] 58 / 1e-11 AT5G42200 112 / 2e-32 RING/U-box superfamily protein (.1) Lus10023617 [exp] 60 / 2e-11 AT5G05810 219 / 1e-68 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G098100 [exp] 122 / 2e-36 AT2G18670 91 / 2e-23 RING/U-box superfamily protein (.1) Potri.018G098000 [exp] 112 / 2e-32 AT2G18670 87 / 6e-22 RING/U-box superfamily protein (.1) Potri.006G175700 [exp] 112 / 6e-32 AT2G18670 91 / 1e-22 RING/U-box superfamily protein (.1) Potri.002G017400 [exp] 73 / 5e-17 AT5G42200 154 / 2e-48 RING/U-box superfamily protein (.1) Potri.005G244500 [exp] 71 / 4e-16 AT5G42200 149 / 3e-46 RING/U-box superfamily protein (.1) Potri.002G153400 [exp] 64 / 2e-13 AT2G20030 83 / 8e-19 RING/U-box superfamily protein (.1) Potri.005G108200 [exp] 63 / 6e-13 AT4G35840 369 / 7e-131 RING/U-box superfamily protein (.1) Potri.018G042501 [exp] 64 / 8e-13 AT2G20030 244 / 2e-77 RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 64 / 8e-13 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1) Potri.014G076800 [exp] 61 / 3e-12 AT4G10150 84 / 1e-19 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10015506 pacid=23173597 polypeptide=Lus10015506 locus=Lus10015506.g ID=Lus10015506.BGIv1.0 annot-version=v1.0 ATGATCCTGAAAGCCCTAATTATGTTCTTCATAACCACTACCTTCTGCTTCTTCCTCGGCGTGGCCGCAATCCTCCTCCTGATCGCAACCTTGGCCTTCC ACCGCCACACCAAATCCAATCCGTCCGACTACCTGAAGAAACTCCCCGATTTCAGATTCCCGAATAGGACGATATCGGAAGAAGGGGAGGTCGAGTGCGT TGTTTGCCTCGACGGGATTAAGCAAGGGCAATGGTGCAGGATGCTTTGCGGCTGTGGACACGTATTCCATCGCCGATGCGTGGATACTTGGCTGTCGAAG GTTCCCTCTTGCCCGATTTGTCGCGCTAGGGTTCAATTAGATTCAGGGAGTTGGGCTCAAGAAAGGAAGCCTTGTCTTGGTTGGATTGGAAGAACAAGTT GA
AA sequence Show only first row Show all	>Lus10015506 pacid=23173597 polypeptide=Lus10015506 locus=Lus10015506.g ID=Lus10015506.BGIv1.0 annot-version=v1.0 MILKALIMFFITTTFCFFLGVAAILLLIATLAFHRHTKSNPSDYLKKLPDFRFPNRTISEEGEVECVVCLDGIKQGQWCRMLCGCGHVFHRRCVDTWLSK VPSCPICRARVQLDSGSWAQERKPCLGWIGRTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18670			RING/U-box superfamily protein...		Lus10015506 [exp]	0	1
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10033889 [exp]	1.0	0.9878
AT3G14630		CYP72A9	"cytochrome P450, family 72, s...		Lus10017775 [exp]	2.0	0.9811
AT1G66880			Protein kinase superfamily pro...		Lus10028494 [exp]	3.0	0.9795
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Lus10026936 [exp]	3.3	0.9747
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10003371 [exp]	4.8	0.9683
AT1G47530			MATE efflux family protein (.1...		Lus10042344 [exp]	5.5	0.9782
AT2G27510		ATFD3	ferredoxin 3 (.1)		Lus10020616 [exp]	5.8	0.9706
AT5G19140		AtAILP1, AILP1	Aluminium induced protein with...		Lus10034038 [exp]	5.9	0.9753
AT1G71696		SOL1.4, SOL1.3,...	SUPPRESSOR OF LLP1 1, carboxyp...		Lus10028694 [exp]	6.2	0.9698
AT2G19860		ATHXK2	ARABIDOPSIS THALIANA HEXOKINAS...		Lus10012946 [exp]	6.7	0.9748

Compare expression of checked genes

Lus10015506 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.