Plant FIBer expression Database

Lus10015507 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G16850 99 / 7e-24 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019980
[exp]
244 / 7e-80 AT4G16850 194 / 9e-60 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G097900
[exp]
123 / 3e-33 AT4G16850 162 / 9e-48 unknown protein
PFAM info
Representative CDS sequence
>Lus10015507 pacid=23173624 polypeptide=Lus10015507 locus=Lus10015507.g ID=Lus10015507.BGIv1.0 annot-version=v1.0
ATGAGAAGATTTGAACCTAGTTTAGACCCCATTTGGACTAAGTTGAAATTTCCTCAAATCGCAGATCCTCCGCCTCGAATTCCTCGCCACCATAGCTCCT
ACTCGCTACGAATCTCGCCAGGTGTGGAGGAATCTCGCGAGGTCTTTCTCTCCCTGCTCCGGATCAAGCTCGTCCACCTCGTCCCGGCCAACCTCGTCGC
CATATTGACAGCCATCGTCGCCGTCGATTCTGCCGCCGGCGTAGGAGGTGGAAGGAAATACCCGGCGACGATCGCGGCTGTGAAGCATGCCTGGACGAGG
GTGTTGGCGACGTCGATCTGTATGTATGCGGTCTCGTGGATGTATGCCGGTGTTCCGGTTACGATGATGGCGATGGTGGCCGGCGATGGAGGCAAAGGGA
TCCGGTTTGTGATTTGGGTGGTCGGGTTGGGGATGGAGGTTTATTTGATGGCGGTGTTGGGGATGGGATTGGTTGTTTCTATCTTGGAGAAGAAATCCGG
GTGGGAGGCCATTCGGGTCGGGTTCGACTTGATGGACGGGGCACGGGTTTGCGGTTGGATTTTGTCGGGTTTATTTGCGGTCGCGACTGGGTTGGTTGGG
TGGGCGATGGAGTTGACGGTGGTGGACGCCGGCGGCGATGATGCCAATGGGTTAGCTGGGGAATTGATGAGGTGTACGGCGGTGGAAGGGTGGGAGAGGT
TGGCATTGGTGGGGTGTTACGCGGTGGTTGTGGTTTCGGGGTTTGTGGTGAGTACCGTGTTTCACAAGGAAGTTAGGAAACGACACAGGATTAAAGATCA
AGTGGACAAAATTTTAGACGCATGA
AA sequence
>Lus10015507 pacid=23173624 polypeptide=Lus10015507 locus=Lus10015507.g ID=Lus10015507.BGIv1.0 annot-version=v1.0
MRRFEPSLDPIWTKLKFPQIADPPPRIPRHHSSYSLRISPGVEESREVFLSLLRIKLVHLVPANLVAILTAIVAVDSAAGVGGGRKYPATIAAVKHAWTR
VLATSICMYAVSWMYAGVPVTMMAMVAGDGGKGIRFVIWVVGLGMEVYLMAVLGMGLVVSILEKKSGWEAIRVGFDLMDGARVCGWILSGLFAVATGLVG
WAMELTVVDAGGDDANGLAGELMRCTAVEGWERLALVGCYAVVVVSGFVVSTVFHKEVRKRHRIKDQVDKILDA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G16850 unknown protein Lus10015507
[exp]
0 1
AT5G18170 GDH1 glutamate dehydrogenase 1 (.1) Lus10005697
[exp]
2.4 0.9576
AT5G38760 Late embryogenesis abundant pr... Lus10003046
[exp]
2.8 0.9455
AT4G13830 J20 DNAJ-like 20 (.1.2) Lus10002356
[exp]
6.7 0.9264
AT4G21920 unknown protein Lus10001143
[exp]
9.7 0.9403
AT4G21510 F-box family protein (.1) Lus10018432
[exp]
13.3 0.9009
AT4G37870 PCK1, PEPCK phosphoenolpyruvate carboxykin... Lus10028227
[exp]
14.5 0.9422
AT3G14260 Protein of unknown function (D... Lus10001484
[exp]
14.6 0.9410
AT1G61215 BRD4 bromodomain 4 (.1) Lus10011227
[exp]
15.9 0.9215
AT2G23790 Protein of unknown function (D... Lus10022496
[exp]
19.8 0.9271
AT1G57610 Protein of unknown function (D... Lus10034435
[exp]
21.4 0.9244

Lus10015507 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.