Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023204 [exp] 283 / 1e-94 AT2G18680 75 / 4e-15 unknown protein Lus10019981 [exp] 203 / 3e-65 ND 37 / 0.003 Lus10008900 [exp] 128 / 5e-33 AT4G30360 375 / 3e-122 cyclic nucleotide-gated channel 17 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015508 pacid=23173618 polypeptide=Lus10015508 locus=Lus10015508.g ID=Lus10015508.BGIv1.0 annot-version=v1.0 ATGGAGATCTCTTGGCATAAAGGGTTGGTTTCCATTTTAGCACAAACCTTCAAAATCTTCCCTAAAAATCCAACCTTCATTTCTTGGATTACCATACTCA TCCTCATCTTCAATTCTTTCATCTACTCAATCGTCCTCGTCTTTTTCAAGCTACTAGCCACCTCCTTTGAAAAAATCACGGTCCATTTCGACCTAACAAA CTTCCATTCAACCTTGGCGACCATCATAACCTATGAGTTGGTACTTGCGCTTATCTTATCTCTCTTTTCTCTCTTTGTCGCCGCATCCACAATCCTTGCT ACCGCCGTTACACATAGAGGAAAGCCCATTGTTATAACCGTAAGGATACTGTTTCGGAAGGTAATAAAGTCTTGGAAAAATCCCGTTTTGACTTGGATTT ACACGACCCTTTTCAGTCTAGGTTGTCTATGTCTTGTTTTTCTAATCTCGTATCCTTTTACGCTTGCGTTGAGTCTCAACCCACGACTTTTATCCGTAAT AATGCTTGTTTTCACCCTCTCGGGTTTGGTTTTGTACCTATACGTCCAAGTTGTGTTGAGTTTAGGGCTAGTGGTTTCGGTCGTGGAGCAGGAGATTCGC GGGCTTGAAGCGATTGGGAAGGCGGCCAAGGTTGCACAAGGGATGCGGCTACATGGCCTTGTCATGAATATGATGTTTGGAGTGGTGGGTTGGGGTTTGT TCAGTTGTTTGGTTTGGGCCGGTTTTCAGTTGCCGGCGGCTGGACAAGTGTCTGTCGGGATGGGGTTGGCCGGCCTTGGAAGTCCGACGGTGGGCCAATC ACTTGTTGGGTTGGTAGTGTTTAATGGGTTTTGTTTGATGAAGATGTTGTGGTGGATGGCTTATACTGTTATGTTCTATGAAGGGATGAAGAGACGTGGG GAAGAGGTTGTTGAGATGGTGGAGGATGTGGAGTACACTAAAGTACCCATTGAAACCATGGTCTGA
AA sequence Show only first row Show all	>Lus10015508 pacid=23173618 polypeptide=Lus10015508 locus=Lus10015508.g ID=Lus10015508.BGIv1.0 annot-version=v1.0 MEISWHKGLVSILAQTFKIFPKNPTFISWITILILIFNSFIYSIVLVFFKLLATSFEKITVHFDLTNFHSTLATIITYELVLALILSLFSLFVAASTILA TAVTHRGKPIVITVRILFRKVIKSWKNPVLTWIYTTLFSLGCLCLVFLISYPFTLALSLNPRLLSVIMLVFTLSGLVLYLYVQVVLSLGLVVSVVEQEIR GLEAIGKAAKVAQGMRLHGLVMNMMFGVVGWGLFSCLVWAGFQLPAAGQVSVGMGLAGLGSPTVGQSLVGLVVFNGFCLMKMLWWMAYTVMFYEGMKRRG EEVVEMVEDVEYTKVPIETMV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18680			unknown protein		Lus10015508 [exp]	0	1
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10016173 [exp]	9.0	0.8187
AT1G16670			Protein kinase superfamily pro...		Lus10026207 [exp]	9.8	0.8541
					Lus10023874 [exp]	10.5	0.8322
					Lus10001144 [exp]	15.9	0.8027
AT5G13550		SULTR4;1	sulfate transporter 4.1 (.1)		Lus10040319 [exp]	19.0	0.8024
AT3G15780			unknown protein		Lus10011492 [exp]	22.8	0.7979
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10035289 [exp]	31.0	0.8181
AT1G23770			F-box family protein (.1)		Lus10006138 [exp]	35.2	0.7830
AT3G23570			alpha/beta-Hydrolases superfam...		Lus10004436 [exp]	36.0	0.8058
AT2G39650			Protein of unknown function (D...		Lus10023412 [exp]	37.9	0.8114

Compare expression of checked genes

Lus10015508 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.