Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18700 1166 / 0 ATTPSB, ATTPS11 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1) AT1G23870 1071 / 0 ATTPS9 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) AT1G60140 1060 / 0 ATTPS10 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1) AT1G68020 1054 / 0 ATTPS6 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) AT4G17770 1051 / 0 ATTPS5 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) AT1G70290 1050 / 0 ATTPSC, ATTPS8 trehalose-6-phosphatase synthase S8 (.1) AT1G06410 1003 / 0 ATTPSA, ATTPS7 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) AT1G16980 439 / 1e-141 ATTPS2 TREHALOSE -6-PHOSPHATASE SYNTHASE S2, trehalose-phosphatase/synthase 2 (.1) AT1G17000 422 / 2e-135 ATTPS3 TREHALOSE -6-PHOSPHATASE SYNTHASE S3, trehalose-phosphatase/synthase 3 (.1) AT1G78580 423 / 3e-134 ATTPS1 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019982 [exp] 1574 / 0 AT4G17770 1076 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) Lus10030853 [exp] 1092 / 0 AT1G60140 1388 / 0.0 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1) Lus10034585 [exp] 1085 / 0 AT1G68020 1462 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Lus10012990 [exp] 1083 / 0 AT1G23870 1345 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) Lus10030635 [exp] 1076 / 0 AT1G60140 1367 / 0.0 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1) Lus10029175 [exp] 1075 / 0 AT1G23870 1345 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) Lus10021805 [exp] 1066 / 0 AT1G68020 1452 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Lus10005425 [exp] 1028 / 0 AT1G06410 1338 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10015231 [exp] 1026 / 0 AT1G06410 1337 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G175500 [exp] 1207 / 0 AT2G18700 1151 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1) Potri.018G097700 [exp] 1196 / 0 AT2G18700 1118 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1) Potri.003G094500 [exp] 1087 / 0 AT4G17770 1442 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) Potri.010G104500 [exp] 1083 / 0 AT1G68020 1415 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Potri.001G139500 [exp] 1078 / 0 AT4G17770 1429 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) Potri.015G074000 [exp] 1075 / 0 AT1G23870 1285 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) Potri.012G078500 [exp] 1071 / 0 AT1G23870 1284 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) Potri.008G136500 [exp] 1070 / 0 AT1G68020 1410 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Potri.011G070900 [exp] 1022 / 0 AT1G06410 1343 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Potri.004G061500 [exp] 1016 / 0 AT1G06410 1286 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF02358 [flax] [poplar] Trehalose_PPase Trehalose-phosphatase CL0113 [flax] [poplar] GT-B PF00982 [flax] [poplar] Glyco_transf_20 Glycosyltransferase family 20
Representative CDS sequence Show only first row Show all	>Lus10015509 pacid=23173664 polypeptide=Lus10015509 locus=Lus10015509.g ID=Lus10015509.BGIv1.0 annot-version=v1.0 ATGTTGTCCCAGTCTTGCATAGAGTGTCTCAGTTTAATCTCCGTCGACGATTTCCGTGTCATCAATCGGTTCCCTCCCTCCTTCAAACTCACTTCTCCAA TCCCCTCCGAACACCGCCAACTACAACAACAACAACAACAACAACAACCCAAATTCACTTCTTCTCCCGCCGCCGGGGAGCAACGGCGCATCGTGGTGGC GAACCAGTTGCCGATTCGGGCGATGCCCGACTCAGGAACCGAGTCGAAATGGCGTTTCGAGCTCGACGAGGACTCGCTATACCTCCAGATGAAGGACGGT TTCGCTCCGGGGACGGAAGTCTGGTACGTGGGATGTCTGAAGCCCGAAATCGAGCCTCGGTTTCAGGACGAGGTGTCGCAGTTCCTTGCAGAAAACTTCC GGTGCGTGCCGGTTTTCCTGCCGCCTGATTTGTCGACCCGGTTCTACCATGGGTTTTGTAAGCACTATTTATGGCCGCTCTTCCACTACATGCTTCCCAT ATCGCCTTCCAACGGCGGCGCGTCGATGTTCGAGCGGCGACACTGGCAGGCGTACGTCTCGGCCAACAAGGTTTTCGCCGATCGAGTGGTGGAAGTTTTG AATCCTGACGAGGATTCCGTGTGTGTTCATGATTATCACCTCATGTTGTTGCCTACTTTTTTGAGGAAAAAATATCACAGAGTGAAATTAGGGTTCTTCC TTCACAGTCCGTTTCCTTCGTCCGAGATTTACAGGACGATCCCAGTGAGGGAAGAGCTGTTGAGGGCTTTGTTGAATTGCGATTTGGTGGGGTTCCATAC GTTCGATTACGCTCGTCATTTCTTGTCCTGCTGTAGTAGGATGCTGGGTTTGGATTACGAATCAAAGAGAGGGTATATTGGGTTGGAGTATTTTGGGAGG ACTGTAAGTATCAAGATCTTGCCTGTTGGGATTCATATGGGTCAGCTCGAATCAATTTTGAACCACGAATCGATTGTGGAGAAGGTTAAGGAGTTGAAAG AGAGGTTTAAAGGGAAGACTGTGATTGTAGGAGTCGATGATTTGGATGTGTTCAAAGGGATAAGTCTCAAGTTTCTAGCAATGGGGAGGCTATTGGAGCA GAATCCTGATTTGGTTAGGAAAGTTGTGCTGGTTCAGATTTGTAATCCGGCAAGGAGTAAAGGCAAAGACGTGAAAGATGTTGAAGATGAGATTCAGCTG ATTGCGAATCAGGTGAATCAAAGATTCGGGGGAGATGGGTATCAGCCTATTGTGTTCGTCAATGGTGCTTTGACTACGCAGGAGAAAGCTGCTTACTATG TGATCTCTGAATGCTGTATAGTGAACTGCATAAGGGATGGGATGAACTTGGTTTCCTATAAGTACACTGTTTGCAGGCAAGGGAGTCCTATTTTGGATAA GGAGATGGGAAGTGATGATGATGTTGGTCCCAAGAGGAGTGTGTTGATTGTCTCGGAATTCATAGGGTGTTCGCCCTCGTTGAGTGGTGCGATCCGGGTG AACCCATGGAACATCGATGCAGTGGCGAACGCAATGAGCGAGGCAATCACGATGAAGGAAGATGAGAGGCGACTTCGCCACGAGAAGCATTACAAGTACA TCAGTTCGCACGATGTCGCTTACTGGGCGAGGAGCTTCGATAACGACCTCGAAAGGGCGTGTCGTGATCATTACAACAAGAGGTATTGGGGAGTTGGGTT TGGATTGGGTTTCAGGATTGTTGCCTTGGGACCAAGCTTTAGGAAGCTTGCCGTTGAGCCCATTGTGGCTGCTTATAAAAGGACTAGCAAAAGGTTGATT TTGCTAGACTATGATGGTACCATGATGCCTCAAGCTTCCGTGGATAAGTCCCCCAGCGAAGAAGTGATCTTGGTGCTTAGCCGTTTGTGTAACGATCCGA GAAACGTGGTGTTCATCGTCAGTGGTCGAGGTAAAGGTCCCCTGAGCAAGTGGTTTACTCAGTGTGGGAAACTGGGTATATCTGCAGAACATGGTTACTT CACTAGTTGGAGTCGAGATTCGGAGTGGGAGGCATGTCCTGTGGTGATGGAGAGTGAGTGGAAGAAGATAGCAGAGCCGGTGATGGAGCTTTACACAGAA ACAACAGATGGGTCGTTCATAGAACATAAAGAGAGCGCATTGGTGTGGCATTACCAGGAGGCCGATGCACATTTTGGACAGAGCCAAGCCAAAGAGCTAC TTGATCACTTGGAGAATGTTCTTGCCAATGAACCTGTTGTTGTCAAGAGAGGACAACACATCGTTGAGGTCAAACCCCAGGGAGTAAGTAAAGGCATAGT GGTATCGAACTTGATCTCAACAATGCAGAAAGCTGGCAAGTCCCCAGATTTCCTGCTCTGCATTGGGGACGATCGATCTGATGAGGACATGTTCGAGTCG ATAGCAAGCAAAGTCGAGAATCCGTACTCGGCTTCTTCAATAGCAGAGGTTTTCGCTTGCACGGTTGGGCAGAAGCCGAGCATGGCAAAGTACTATCTTG ACGATACTGTTGAAGTTATAAAGTTGCTTCAAGGTCTTGCCACAGCATCTTGA
AA sequence Show only first row Show all	>Lus10015509 pacid=23173664 polypeptide=Lus10015509 locus=Lus10015509.g ID=Lus10015509.BGIv1.0 annot-version=v1.0 MLSQSCIECLSLISVDDFRVINRFPPSFKLTSPIPSEHRQLQQQQQQQQPKFTSSPAAGEQRRIVVANQLPIRAMPDSGTESKWRFELDEDSLYLQMKDG FAPGTEVWYVGCLKPEIEPRFQDEVSQFLAENFRCVPVFLPPDLSTRFYHGFCKHYLWPLFHYMLPISPSNGGASMFERRHWQAYVSANKVFADRVVEVL NPDEDSVCVHDYHLMLLPTFLRKKYHRVKLGFFLHSPFPSSEIYRTIPVREELLRALLNCDLVGFHTFDYARHFLSCCSRMLGLDYESKRGYIGLEYFGR TVSIKILPVGIHMGQLESILNHESIVEKVKELKERFKGKTVIVGVDDLDVFKGISLKFLAMGRLLEQNPDLVRKVVLVQICNPARSKGKDVKDVEDEIQL IANQVNQRFGGDGYQPIVFVNGALTTQEKAAYYVISECCIVNCIRDGMNLVSYKYTVCRQGSPILDKEMGSDDDVGPKRSVLIVSEFIGCSPSLSGAIRV NPWNIDAVANAMSEAITMKEDERRLRHEKHYKYISSHDVAYWARSFDNDLERACRDHYNKRYWGVGFGLGFRIVALGPSFRKLAVEPIVAAYKRTSKRLI LLDYDGTMMPQASVDKSPSEEVILVLSRLCNDPRNVVFIVSGRGKGPLSKWFTQCGKLGISAEHGYFTSWSRDSEWEACPVVMESEWKKIAEPVMELYTE TTDGSFIEHKESALVWHYQEADAHFGQSQAKELLDHLENVLANEPVVVKRGQHIVEVKPQGVSKGIVVSNLISTMQKAGKSPDFLLCIGDDRSDEDMFES IASKVENPYSASSIAEVFACTVGQKPSMAKYYLDDTVEVIKLLQGLATAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18700		ATTPSB, ATTPS11	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10015509 [exp]	0	1
AT5G49450	bZIP	ATBZIP1	basic leucine-zipper 1 (.1)		Lus10037750 [exp]	1.7	0.9688
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020360 [exp]	2.2	0.9560
AT2G37380		MAKR3	MEMBRANE-ASSOCIATED KINASE REG...		Lus10025286 [exp]	3.2	0.9646
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10042934 [exp]	3.9	0.9623
AT5G04760	MYB		Duplicated homeodomain-like su...		Lus10041088 [exp]	6.0	0.9544
AT4G34030		MCCB	3-methylcrotonyl-CoA carboxyla...		Lus10014068 [exp]	6.6	0.9621
AT5G04760	MYB		Duplicated homeodomain-like su...		Lus10036413 [exp]	8.5	0.9511
AT5G24890			unknown protein		Lus10009793 [exp]	9.4	0.9525
AT3G18650	MADS	AGL103	AGAMOUS-like 103 (.1)		Lus10012656 [exp]	9.4	0.8982
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Lus10020288 [exp]	10.4	0.9356

Compare expression of checked genes

Lus10015509 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.