Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30360 969 / 0 ATCNGC17 cyclic nucleotide-gated channel 17 (.1) AT2G24610 931 / 0 ATCNGC14 cyclic nucleotide-gated channel 14 (.1) AT5G14870 811 / 0 ATCNGC18 cyclic nucleotide-gated channel 18 (.1) AT3G48010 778 / 0 ATCNGC16 cyclic nucleotide-gated channel 16 (.1) AT2G28260 730 / 0 ATCNGC15 cyclic nucleotide-gated channel 15 (.1) AT1G15990 694 / 0 ATCNGC7 cyclic nucleotide gated channel 7 (.1) AT4G30560 690 / 0 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT2G23980 685 / 0 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT1G19780 684 / 0 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT5G57940 682 / 0 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019983 [exp] 1423 / 0 AT4G30360 1000 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10023203 [exp] 1198 / 0 AT4G30360 1002 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10042434 [exp] 883 / 0 AT2G24610 916 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10026233 [exp] 862 / 0 AT2G24610 922 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10020122 [exp] 823 / 0 AT2G24610 879 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10026924 [exp] 813 / 0 AT2G24610 868 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10002363 [exp] 810 / 0 AT3G48010 919 / 0.0 cyclic nucleotide-gated channel 16 (.1) Lus10039486 [exp] 801 / 0 AT5G14870 985 / 0.0 cyclic nucleotide-gated channel 18 (.1) Lus10039415 [exp] 800 / 0 AT5G14870 980 / 0.0 cyclic nucleotide-gated channel 18 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G097600 [exp] 1110 / 0 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.018G009200 [exp] 954 / 0 AT2G24610 939 / 0.0 cyclic nucleotide-gated channel 14 (.1) Potri.017G067000 [exp] 816 / 0 AT3G48010 964 / 0.0 cyclic nucleotide-gated channel 16 (.1) Potri.013G108200 [exp] 791 / 0 AT5G14870 949 / 0.0 cyclic nucleotide-gated channel 18 (.1) Potri.009G010700 [exp] 761 / 0 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.018G106100 [exp] 705 / 0 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.014G097900 [exp] 672 / 0 AT1G01340 901 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.015G019100 [exp] 671 / 0 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.012G002200 [exp] 670 / 0 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.003G183000 [exp] 669 / 0 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [flax] [poplar] Ion_channel PF00520 [flax] [poplar] Ion_trans Ion transport protein CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10015510 pacid=23173644 polypeptide=Lus10015510 locus=Lus10015510.g ID=Lus10015510.BGIv1.0 annot-version=v1.0 ATGGAGTGGAAGAAGGATAAGCTTGTGAGGTTTTATCCAGAGGGTAAACAGCACAAAGGAGGAATTCCATGGGGAAAGAATGATGCAGTTTACCCTGAAA ACCCATCTTCTGTGGCTTCTTCATCTTCATTGCTTATGGCAGGGAGTGGGGTATTGGGAAGCAAAGGTAATAATAAAATCCCTGAAACGTCAAATTTAGG AGGAAGGAAGTCAAAAGTGTTCTCGGAGGACTATCAACCATGGCACATGAAAATGCTGGATCCTGGGAGTGAAATCGTGTTAAGATGGAACAGGATTTTC CTTGTCTCATCCTTGTTGGCTCTCTTCATCGATCCCCTCTACTTTTATCTTCCTACCATAAGAGGAGATGGGAAAACTTCCTGTGTTAGTACGGACTACA AGTTGCGAATTGTTGTTACCTTCTTCAGAACCATTGCAGATCTTTTCTATCTGCTTCATGTGGTTTTGAAGTTCAGGACGGCATATGTTGCTCCAAGCTC TCGTGTTTTCGGAAGGGGGGAACTTGTCATGGATCCTAAATTGATTGCCAGGAGGTACATTCGATCTGACTTCTTCATTGATCTCATTGCCATTCTTCCT CTCCCTCAGATGGTCGTCTGGTTCATCATCCCTGCGACAAGAATGCCTAGAACTGATCATAACAATAATGCGCTGGCCCTGATCGTCTTGCTTCAGTATA TCCCCAGGTTATATCTTATCTTTCCACTGAGCTCCCAAATCATTAAGCATACTGGGTTAGTCACAAGGACAGCTTGGGCAGGGGCTGCTTACAATCTCAT ATTGTACATGTTGGCAAGCCATGTTTTAGGAGCTGCATGGTATTTACTATCCGTCGAGAGGCATACAACCTGCTGGAAATCAATTTGTGGAAACGAAACT AGCCCTCTTAAATGCGAGCTTAATTACCTTGACTGCGATGCTTTTAACCACGTGGATCGGGAAGCCTGGGCTAAGAGTACAAGTGTTTTCGAAAAGTGCG ATCCGAGAAACGATATCGAATTCCAATATGGGTTATTTGAAAATGCTATGAAAAAGAGGGTCGTCTCTACCAGTTTTGTGGACAAGTATTTCTATTGCTT GTGGTGGGGATTACAGCAATTAAGTTCATATGGCCAGAATTTGTCAACAAGCACATTTATTGGAGAGACATCATTTGCAATACTGATTTCCATTGTGGGG CTTGTTCTCTTTGCTCATTTGATTGGCAATATGCAGACATACCTTCAATCTCTTACAGTAAGGCTCGAGGAATGGAGGCTGAAGCGAAGAGATACAGAAG AGTGGATGAGACATCGCCAACTCCCCGAAGATCTGAGACAACGTGTTCGACGTTTTGTTCAATACAAATGGGTCGCAACTCGCGGCGTCCTAGAGGAAGA TATCCTACGTGGCTTACCTACTGATCTTCGTCGTGACATCCAGCGCCACCTCTGCCTTGACCTTGTCCGACGGGTTCCTTTCTTTTCGCAGATGGATGAT CAGTTGCTCGATGCAATATGCGAGCATCTGGTGTCTTCCCTAAGCACACAAGGCACCTACATTGTCCGGGAAGGTGACCCCGTAACCGAAATGCTGTTCA TCATCCGTGGAAGTCTCGAGAGCTCCACCACAAATGGCGGAAGGACGGGTTTCTTCAACACCATAATGCTCAAACCTGGAGACTTCTGCGGAGAGGAGCT TTTAGCCTGGGCTCTGCATCCCAAATCATCTCTCAATCTACCCTCATCGACTAGAACAGTTAGATCGCTGAATGAAGTCGAGGCATTTGCACTCCAAGCT GAGGATCTCAAGTTTGTTGCCAACCAATTTAGACGGCTGCATAGCAAGAAGCTGCAGCATACATTTCGGTACCATTCCCATCACTGGAGGACCTGGGCAG CCTGCTTTATCCAAGCAGCTTGGCGGCGGCACAAGAAAAGGGTGGTTGAACATAGTCTCATGATGTCTGAATCGTTTCAGATGGACCGGGATAGGGAAGA GTATGAAGACTCGACTTCGGCGGAAGGCGTAGAAAGAAGCTCGAATCCTGCTAAAATGAACCTTGGGGTAACGATACTGGCTTCAAGATTTGCAGCTAAC ACGAGGAGAGGAGTTCAAAAGACAAAAGATGTGGAAATGCTCAAACTGCTGCAGAAGCCTGAGGAGCCTGACTTCTCTGCTGAAGCTGATGACTAG
AA sequence Show only first row Show all	>Lus10015510 pacid=23173644 polypeptide=Lus10015510 locus=Lus10015510.g ID=Lus10015510.BGIv1.0 annot-version=v1.0 MEWKKDKLVRFYPEGKQHKGGIPWGKNDAVYPENPSSVASSSSLLMAGSGVLGSKGNNKIPETSNLGGRKSKVFSEDYQPWHMKMLDPGSEIVLRWNRIF LVSSLLALFIDPLYFYLPTIRGDGKTSCVSTDYKLRIVVTFFRTIADLFYLLHVVLKFRTAYVAPSSRVFGRGELVMDPKLIARRYIRSDFFIDLIAILP LPQMVVWFIIPATRMPRTDHNNNALALIVLLQYIPRLYLIFPLSSQIIKHTGLVTRTAWAGAAYNLILYMLASHVLGAAWYLLSVERHTTCWKSICGNET SPLKCELNYLDCDAFNHVDREAWAKSTSVFEKCDPRNDIEFQYGLFENAMKKRVVSTSFVDKYFYCLWWGLQQLSSYGQNLSTSTFIGETSFAILISIVG LVLFAHLIGNMQTYLQSLTVRLEEWRLKRRDTEEWMRHRQLPEDLRQRVRRFVQYKWVATRGVLEEDILRGLPTDLRRDIQRHLCLDLVRRVPFFSQMDD QLLDAICEHLVSSLSTQGTYIVREGDPVTEMLFIIRGSLESSTTNGGRTGFFNTIMLKPGDFCGEELLAWALHPKSSLNLPSSTRTVRSLNEVEAFALQA EDLKFVANQFRRLHSKKLQHTFRYHSHHWRTWAACFIQAAWRRHKKRVVEHSLMMSESFQMDRDREEYEDSTSAEGVERSSNPAKMNLGVTILASRFAAN TRRGVQKTKDVEMLKLLQKPEEPDFSAEADD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Lus10015510 [exp]	0	1
AT2G30990			Protein of unknown function (D...		Lus10033602 [exp]	4.9	0.8347
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10025635 [exp]	7.3	0.8161
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10036744 [exp]	10.1	0.8368
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10001203 [exp]	13.5	0.8065
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10037131 [exp]	17.0	0.8482
AT1G14000		VIK	VH1-interacting kinase (.1)		Lus10030435 [exp]	17.7	0.7926
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10028445 [exp]	18.8	0.7870
AT5G20910		AIP2	ABI3-interacting protein 2, RI...		Lus10017865 [exp]	19.2	0.8022
AT4G23850		LACS4	long-chain acyl-CoA synthetase...		Lus10032380 [exp]	22.7	0.8099
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10003460 [exp]	34.2	0.7993

Compare expression of checked genes

Lus10015510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.