Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57710 889 / 0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30350 828 / 0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT3G52490 347 / 4e-105 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT2G29970 316 / 4e-92 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT1G07200 309 / 6e-90 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G29920 278 / 6e-79 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57130 271 / 4e-76 Clp amino terminal domain-containing protein (.1) AT2G40130 179 / 3e-48 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G74310 72 / 2e-12 HOT1, ATHSP101 heat shock protein 101 (.1) AT5G50920 64 / 6e-10 CLPC1, CLPC, ATHSP93-V, HSP93-V, DCA1 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019984 [exp] 1892 / 0 AT5G57710 912 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023201 [exp] 728 / 0 AT5G57710 404 / 1e-127 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008902 [exp] 726 / 0 AT5G57710 392 / 3e-124 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10028849 [exp] 241 / 4e-67 AT3G52490 498 / 5e-165 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021291 [exp] 243 / 7e-67 AT3G52490 690 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008970 [exp] 238 / 1e-64 AT3G52490 460 / 1e-147 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10036183 [exp] 232 / 2e-63 AT2G29970 566 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10020886 [exp] 219 / 5e-59 AT5G57710 226 / 2e-61 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038320 [exp] 204 / 7e-54 AT2G29970 696 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G097300 [exp] 1179 / 0 AT5G57710 998 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G175200 [exp] 1157 / 0 AT5G57710 913 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G140900 [exp] 354 / 7e-106 AT5G57130 751 / 0.0 Clp amino terminal domain-containing protein (.1) Potri.010G241600 [exp] 347 / 7e-105 AT3G52490 641 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G017600 [exp] 339 / 9e-102 AT3G52490 635 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G073800 [exp] 332 / 9e-98 AT4G29920 693 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G071800 [exp] 323 / 4e-96 AT3G52490 785 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G204500 [exp] 322 / 2e-95 AT3G52490 852 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G252500 [exp] 213 / 2e-56 AT2G29970 668 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G069100 [exp] 204 / 1e-53 AT2G29970 610 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015511 pacid=23173669 polypeptide=Lus10015511 locus=Lus10015511.g ID=Lus10015511.BGIv1.0 annot-version=v1.0 ATGAGAGCCGGCCTCAGCACGATCCAGCAAACCCTCACCCCAGAGGCAGCCACCGTCTTAAACCACTCAATTGCCGAAGCAGCTCGCCGGAACCACGGCC AGACCACTCCTCTCCATGTCGCCTCAACTCTTCTATCCTCCTCATCGGGATACCTCCGACAAGCCTGCATCAAATCCCACCCCAATTCTTCACACCCTCT ACAGTGCCGAGCTCTGGAGCTCTGCTTCAGCGTCGCCCTGGAGCGGCTACCCACGGCCCAGAATCTTAACCCGGGACCCGACCCGCCAATTTCCAACGCC TTAATGGCCGCCTTGAAAAGAGCTCAAGCTCATCAGCGGAGAGGATGCCCCGAGCAGCAGCAGCAGCCTCTGTTGGCGGTTAAAGTCGAGCTTGAGCAGC TGATTATCTCGATTCTCGATGACCCGAGTGTGAGTCGGGTCATGAGAGAAGCTAGCTTCTCTAGTCCGGCTGTTAAGGCCACAATTGAACAGTCTTTGAA TTCGCCGCAGCCCCCACCGGCCTCGAATTCCGGTCCGATCGGGATGGGGAGTCGGAATATGTATGTCAATCCTAGATTAGCAGGTGGCGGGTCGGATGAG GTGAAGCGGGTGGTGGGGATTTTGGTTCGGGGCGGGAAGAAGAGGAATCCGGTTTTGGTTGGGGAATCGGAACCCGAAATGGTGGGGAAGGAAGCGTTGA GGAAGATTGCAGAGAGTAAGGAGATAATTGGGGATGTTGAAGTGATTCATTTGGAGAAGGAGTTTGCTGGTGATAGTAGGCAGAGGATCGTTTCGAAGAT TGTGGAGTTGGGAGGTTTGGTTGAGACCCGGTTAGCGGCGGGGAATTCGGGTACTGGGTTGGTTCTCGATTTGGGTGACTTGAAATGGCTGGTGGAGCAG CAAATGGGGTCGGATTTGGGGAAAGTTGCGGTGGCGGAGATGGGGAAGTTGGTCGGGAAGTTTAGGGAAGGGAGAAAGATTTGGTTGATTGGTACAGCCA CTTGCGAGACTTATTTGAGGTGTCAAGTTTATCATCCAACAATGGAGAATGACTGGGATTTGCAGGCTGTTCCTATTGCTAACAGAGCTCCTCTTCCTGG AATTTTCCCAAGACTTGGGACGACTGGATTCATGAGCAACTCTTTTGAGTCATTGTCATCCTCAACATTGATGAAGAGCTTTCCAACGGTGGGGCCAATT GCTCCACTAAAACAGCTACCTGATAATCTGGATCCTGCCCGGAAAACAAACTTGTGCAATCAGTGCAGTCAAAACTATGAGCAAGAGCTGGCAAAGCATG TGCCCAAGAATCTTGAGAAACCTTCCACCGACGACGTTGAAGCTACTAATCAGCAGTCTTTGCCTCCTTGGCTGAAGAATGCCACTACGAATGATCAGGC CGCGACCACTAAGGATCAAGAATTGATACAGAAGCAGAAGACTATGGCATTGCAAAGGAAATGGAATGATACATGCTTGCGACTTCATCCTGGCCATCAT CGATCAAATCATGGCCCCGAGAGGATAACTCAGCCTCTTGCTATCTCAATGCCAAGCTTGTACAATCAGAAGACCCTGGTGCCTTGTGTGCCAAGAATAA GCTTGACTGGTAATAATAACCTCCCTGGAACCCTACAGTTAAATACAAATCTGTTGGCTAAACAGAACCCTAGAAAGGCAACTAGTCCACCCGGAAGCCC TGTGAGGACAGAGCTTGTTCTTGGTCGTCCTAAGCTTGCAGCCGAAACCTTTACTTCTAAGGATAACAAAAATGTAACAGCTGCTCCCGATTCGCAAGCA AAGATGCACGAATTCCAGATTAGCAAACTGCTTGACAAATTGGATGCCGATTCCTATAAGAAATTGCTAAAGGGACTTCTGGAGAAAGTATGGTGGCAGC AAGAGGCAGCATCTGCAGTGGCTACAGTGATGACACATTGCAAATTGGGTAACGGAAAACGGAGAGGAAATGCATCCAAAGGAGATATTTGGTTATTGTT CACTGGCCCTGACAGGATAGGGAAAAAGAAGATGGTAGTTGCTCTATCCGAGCTGGTTCGCCAGTCGAATCCAGTAACAGTTCATCTTGGTTCACGTCGT AATGATGGAGGAGACTCCGAGGTGAGCTTTCGCGGTAAAACTGCCATGGATCGAATCGTGGAGGCAGTTAGGAGGAACCCGTTCTCGGTAGTGGTGCTTG AGGACATTGACGAAGCTGATATGCTAGTCAAAGGGAGTATAAAGCGAGCGATGGAAAGGGGTCGACTTGCTGATTCCCATGGCCGCGAAATCAGCCTTGG CAATGTCATTTTCATACTCACCTCAAGTTGCTTACCGAACGGTGTTGATTTCGTATCTCACGGCTATGCACTTGATGAAAAGAAGCTTGCGAATTTCGTC AGTGGTGGTTGGCAGCTAAGGCTATCCATTCACGGGAAAACAGCAAAGCGTCGAGCAAGTTGGCTTGACGAAGAAGATAGGGCTACGAAGCCGAGGAAGG ATATAGGATCAGCTGGACTAACATTCGACCTCAATGAGGAAGCTGCCGAGATCGAGCAAGTCGGTTCGCGCAATTCGAGTGATGTAACAGTTGACCATGA AGATGAGCATTTCCTCAGTAGCAGACTACTACCACTGACTACTACGACATCACTGCCTTCAGAGGTTCTCGATTTGTTGGACGATAGTGTAGTCTTCAAG CCTGTTGATTTCGGTGTCATCAGAAGGGACATTTCGAATTCCATCACTGATCGTGCTTCGTCCATCATTGGCGATGGGAACAACTTGGAACTCCAAGTGG ATGCCCTGGAGAAAATTGCAGGTGGGTTGTGTTTAGGGTACACTGGTATAGAAGAATGGACAGAGAAAGTATTGGTCCCTAGCTTGAGACAAGTAAGGAT GAGGCTGACTGCAGATCAATCTATGGTAGTCCGGTTGGAACCGGATAGCGAATTGGATAGCCGGGGACAGGGAGATTGGCTACCAAGTAGCATCAGAGTG ATGGTTGATGGTAGATTCTGA
AA sequence Show only first row Show all	>Lus10015511 pacid=23173669 polypeptide=Lus10015511 locus=Lus10015511.g ID=Lus10015511.BGIv1.0 annot-version=v1.0 MRAGLSTIQQTLTPEAATVLNHSIAEAARRNHGQTTPLHVASTLLSSSSGYLRQACIKSHPNSSHPLQCRALELCFSVALERLPTAQNLNPGPDPPISNA LMAALKRAQAHQRRGCPEQQQQPLLAVKVELEQLIISILDDPSVSRVMREASFSSPAVKATIEQSLNSPQPPPASNSGPIGMGSRNMYVNPRLAGGGSDE VKRVVGILVRGGKKRNPVLVGESEPEMVGKEALRKIAESKEIIGDVEVIHLEKEFAGDSRQRIVSKIVELGGLVETRLAAGNSGTGLVLDLGDLKWLVEQ QMGSDLGKVAVAEMGKLVGKFREGRKIWLIGTATCETYLRCQVYHPTMENDWDLQAVPIANRAPLPGIFPRLGTTGFMSNSFESLSSSTLMKSFPTVGPI APLKQLPDNLDPARKTNLCNQCSQNYEQELAKHVPKNLEKPSTDDVEATNQQSLPPWLKNATTNDQAATTKDQELIQKQKTMALQRKWNDTCLRLHPGHH RSNHGPERITQPLAISMPSLYNQKTLVPCVPRISLTGNNNLPGTLQLNTNLLAKQNPRKATSPPGSPVRTELVLGRPKLAAETFTSKDNKNVTAAPDSQA KMHEFQISKLLDKLDADSYKKLLKGLLEKVWWQQEAASAVATVMTHCKLGNGKRRGNASKGDIWLLFTGPDRIGKKKMVVALSELVRQSNPVTVHLGSRR NDGGDSEVSFRGKTAMDRIVEAVRRNPFSVVVLEDIDEADMLVKGSIKRAMERGRLADSHGREISLGNVIFILTSSCLPNGVDFVSHGYALDEKKLANFV SGGWQLRLSIHGKTAKRRASWLDEEDRATKPRKDIGSAGLTFDLNEEAAEIEQVGSRNSSDVTVDHEDEHFLSSRLLPLTTTTSLPSEVLDLLDDSVVFK PVDFGVIRRDISNSITDRASSIIGDGNNLELQVDALEKIAGGLCLGYTGIEEWTEKVLVPSLRQVRMRLTADQSMVVRLEPDSELDSRGQGDWLPSSIRV MVDGRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57710			Double Clp-N motif-containing ...		Lus10015511 [exp]	0	1
AT3G51650			unknown protein		Lus10009100 [exp]	6.6	0.7559
AT4G37100			Pyridoxal phosphate (PLP)-depe...		Lus10000751 [exp]	10.1	0.7514
AT2G36350			Protein kinase superfamily pro...		Lus10020571 [exp]	13.5	0.7576
AT4G20740		EMB3131	EMBRYO DEFECTIVE 3131, Pentatr...		Lus10016361 [exp]	14.5	0.7063
AT3G60850			unknown protein		Lus10004021 [exp]	15.8	0.7070
AT2G46940			unknown protein		Lus10007198 [exp]	16.2	0.7324
AT1G61690			phosphoinositide binding (.1)		Lus10007623 [exp]	18.3	0.7323
AT2G19260			RING/FYVE/PHD zinc finger supe...		Lus10015537 [exp]	22.0	0.7083
AT2G22740		SDG23, SUVH6	SET DOMAIN PROTEIN 23, SU(VAR)...		Lus10011049 [exp]	27.1	0.7382
AT3G05675			BTB/POZ domain-containing prot...		Lus10033220 [exp]	32.5	0.7444

Compare expression of checked genes

Lus10015511 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.