Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57685 64 / 3e-13 LSB1, ATGDU3 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) AT4G25760 57 / 7e-11 ATGDU2 glutamine dumper 2 (.1) AT5G24920 51 / 2e-08 ATGDU5 glutamine dumper 5 (.1) AT2G24762 46 / 2e-06 ATGDU4 glutamine dumper 4 (.1) AT4G31730 44 / 7e-06 ATGDU1, GDU1 glutamine dumper 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019986 [exp] 237 / 1e-80 AT5G57685 125 / 7e-37 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10019985 [exp] 227 / 1e-76 AT5G57685 123 / 3e-36 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10006986 [exp] 100 / 1e-26 AT5G57685 124 / 2e-36 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10008910 [exp] 98 / 9e-26 AT5G57685 125 / 6e-37 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10006987 [exp] 77 / 7e-18 AT5G57685 125 / 2e-37 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10026911 [exp] 50 / 6e-08 AT4G31730 125 / 6e-37 glutamine dumper 1 (.1) Lus10020107 [exp] 47 / 1e-06 AT4G31730 122 / 1e-35 glutamine dumper 1 (.1) Lus10008909 [exp] 39 / 0.0002 AT5G57685 87 / 2e-23 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G173901 [exp] 84 / 1e-20 AT5G57685 89 / 8e-23 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Potri.018G013600 [exp] 58 / 8e-11 AT4G25760 79 / 2e-19 glutamine dumper 2 (.1) Potri.006G267900 [exp] 56 / 4e-10 AT5G57685 83 / 2e-20 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015513 pacid=23173675 polypeptide=Lus10015513 locus=Lus10015513.g ID=Lus10015513.BGIv1.0 annot-version=v1.0 ATGGCCTCCGGTAGAGAACCCTTCAACATGACACCCCGGCCGGAAGCTTCCTCTGTCGGCGGCGGCGTGGAACGCTCGCCGTGGCATTCCCCTGTTCCTT ACCTATTCGGCGGACTTGCAGCCATGTTGGGACTCATCGCCTTCGCGCTCTTGATCCTAGCTTGCTCCTACTGGAAACTCTCAGGCTATATCGACGGGGT GGAAAGAGATTTGGAATCCGGTGAAGGCGGCGGCGGGGGGGATGAGAAGAATGGAGAGAAGAAGAAAGTGGCGGCAGAGGAGGAGTACGAGGAGAAAGTT TTGGTGATTATGGCTGGACAATTGAACCCCACTTTCCTCGCCACTCCGGTCTCCAGCCGGTCATCGTCTTTCGAGAAGACTTGCTCTTGTAATGAGAAAT TGGTTGAGGTTGAAAAACAGGGCAACGAAGAACAGAGTGAAAACAGGGGAAGTGAAGAACAGAGTGAGAACAGAGGAAGTAGTTCAACAATAACGCCGGC GGTAGAGGGGTTGCCTGTGGAGGGTAATACAACGCCGTCGCATTGA
AA sequence Show only first row Show all	>Lus10015513 pacid=23173675 polypeptide=Lus10015513 locus=Lus10015513.g ID=Lus10015513.BGIv1.0 annot-version=v1.0 MASGREPFNMTPRPEASSVGGGVERSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSGYIDGVERDLESGEGGGGGDEKNGEKKKVAAEEEYEEKV LVIMAGQLNPTFLATPVSSRSSSFEKTCSCNEKLVEVEKQGNEEQSENRGSEEQSENRGSSSTITPAVEGLPVEGNTTPSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10015513 [exp]	0	1
AT5G20885			RING/U-box superfamily protein...		Lus10043353 [exp]	4.2	0.8822
AT3G30390			Transmembrane amino acid trans...		Lus10005099 [exp]	9.6	0.8526
AT2G20190		ATCLASP	CLIP-associated protein (.1)		Lus10022838 [exp]	14.6	0.8892
AT2G31130			unknown protein		Lus10017672 [exp]	28.4	0.8703
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10040499 [exp]	29.7	0.8775
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Lus10024484 [exp]	34.3	0.8671
AT1G77030			hydrolases, acting on acid anh...		Lus10000777 [exp]	36.1	0.8384
					Lus10016106 [exp]	46.0	0.7979
AT2G43330		ATINT1	inositol transporter 1 (.1)		Lus10027026 [exp]	54.1	0.8593
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10035835 [exp]	55.1	0.8601

Compare expression of checked genes

Lus10015513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.