Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30340 696 / 0 ATDGK7 diacylglycerol kinase 7 (.1) AT5G57690 690 / 0 ATDGK4 diacylglycerol kinase 4 (.1) AT2G18730 690 / 0 ATDGK3 diacylglycerol kinase 3 (.1) AT4G28130 273 / 2e-86 DGK6, ATDGK6 diacylglycerol kinase 6 (.1) AT2G20900 271 / 3e-85 DGK5, ATDGK5 diacylglycerol kinase 5 (.1.2.3.4) AT5G63770 144 / 3e-37 ATDGK2 diacylglycerol kinase 2 (.1.2) AT5G07920 137 / 2e-34 ATDGK1, DGK1 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019987 [exp] 957 / 0 AT4G30340 713 / 0.0 diacylglycerol kinase 7 (.1) Lus10006991 [exp] 856 / 0 AT2G18730 677 / 0.0 diacylglycerol kinase 3 (.1) Lus10008907 [exp] 386 / 4e-134 AT2G18730 322 / 1e-109 diacylglycerol kinase 3 (.1) Lus10031612 [exp] 252 / 3e-77 AT2G20900 719 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Lus10039747 [exp] 248 / 1e-76 AT2G20900 751 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Lus10033732 [exp] 247 / 2e-75 AT2G20900 730 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Lus10018527 [exp] 214 / 3e-63 AT2G20900 681 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Lus10008906 [exp] 125 / 3e-34 AT2G18730 78 / 1e-17 diacylglycerol kinase 3 (.1) Lus10012719 [exp] 134 / 2e-33 AT5G63770 957 / 0.0 diacylglycerol kinase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G096700 [exp] 780 / 0 AT2G18730 702 / 0.0 diacylglycerol kinase 3 (.1) Potri.006G174700 [exp] 739 / 0 AT4G30340 670 / 0.0 diacylglycerol kinase 7 (.1) Potri.001G408500 [exp] 284 / 5e-90 AT2G20900 695 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Potri.013G148500 [exp] 276 / 1e-86 AT2G20900 765 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Potri.005G070900 [exp] 150 / 6e-39 AT5G63770 897 / 0.0 diacylglycerol kinase 2 (.1.2) Potri.007G097900 [exp] 138 / 8e-35 AT5G63770 933 / 0.0 diacylglycerol kinase 2 (.1.2) Potri.012G066300 [exp] 135 / 7e-34 AT5G07920 1154 / 0.0 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Potri.006G172400 [exp] 96 / 4e-24 AT5G57690 83 / 2e-20 diacylglycerol kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00609 [flax] [poplar] DAGK_acc Diacylglycerol kinase accessory domain CL0240 [flax] [poplar] PFK PF00781 [flax] [poplar] DAGK_cat Diacylglycerol kinase catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10015514 pacid=23173598 polypeptide=Lus10015514 locus=Lus10015514.g ID=Lus10015514.BGIv1.0 annot-version=v1.0 ATGGACGACTCACCCACGTCCACGGCTGCTACCACCTCGTCCACGACGAGGATCGTGGCGTCGAGATCGTCCATGATGGAGTCCTTCCGCGGCTGCGGCC TCTCCGGCGTCCGAATCGACAAGGACGTCCTCAGGAAGAAGCTCGTCATGCCGGAATACCTCCGGCGAGCTATGCTCGACGCGATCAGGTCCAAGGACGC GGCGGATGTCTGCGACCGTTACCGCGATAGCCGCCAACTGCACGTCCCCGAGGATGCTCCTCAATGTCCCATGGTCATCTTCGTCAATTCAAAGAGTGGT GGCCGCCATGGCCCCGAACTCAAGGAGCGGCTCCAGCAATTGATGAGCGAAGAGCAGGTTTTTGACCTCTCAGATGTGAAGCCACACGAATTTCTGAGAC ATGGATTGGTCTGCCTTGAGAAGATGGCCATCCTTGGTGATCTCTGTGCCAAAGAGTGTCGTGAGAAGATGAGGATTATGGTTGCTGGAGGGGATGGTAC GGTTGGTTGGGTATTAGGATGTTTAGCAGAACTTCACAAAGAAGGAAGACAGCCAGTTCCTCCTGTAGGAATCATTCCTCTCGGTACAGGCAATGATTTA TCGCGGAGTTTCGGTTGGGGAGGCTCATTTCCTTTTGCTTGGAAATCAGCTATCAAACGGTCTCTTGATAGGGCAGTTGCTGGGCCAGTTTGTCGTCTTG ATAGTTGGCAGATTGTGATATCGATGGCAGGAGGAGAAGTTGTTGATGCTCCCTATTCCTTAAAGGCTACTGAAGAGTGTCATCTTGATCAGGGTTTGGA AGTCGAGGGAGAGTTGTCTGATAAAATGGCTTGCTATGAAGGGGAGTTTTATAATTACTTCAGCATAGGAATGGATGCCCAAGTTGCTTATGGTTTCCAT CATTTGCGTAACGAAAAGCCTTACCTCGCACAAGGACCCATTGCAAATAAGTTGATATACTCTGGTTATACTTGCACCCAAGGCTGGTTTCTGACACCTT GCATCAACGACCCGAGTCTGAGGGGACTAAAAAATATCCTAAGGATGCACATTAAAAGGGTCAACTGTTCTGAATGGGAGCAGGTTCCAGTTCCGAAAAG TGTAAGAGCAATAGTTTGTTTGAACCTTCATAACTATGGAAGTGGCAGAAACCCATGGGGTAACCCAACTGCTGACTACTTGGAGAAGAGGGGATTTGTG GAGGCACATGTTGACGATGGTCTCCTCGAAATTTTCGGGTTGAAGCAAGGCTGGCATGCCTCGTTTGTTATGGTTGAACTCATATCTGCAAAGCACATTG CCCAGGCTGCAGCCATAAGACTGGAGATAAGGGGTGGGGAATGGCGAGATGCGTTTCTTCAGATGGACGGGGAGCCATGGAAGCAGCCGATGAGCAGGGA GTACTCGTCGTTTGTAGAAATAAAGCGGGTACAGCATCAATCAGTTATGATCAGTGGTGAGTAA
AA sequence Show only first row Show all	>Lus10015514 pacid=23173598 polypeptide=Lus10015514 locus=Lus10015514.g ID=Lus10015514.BGIv1.0 annot-version=v1.0 MDDSPTSTAATTSSTTRIVASRSSMMESFRGCGLSGVRIDKDVLRKKLVMPEYLRRAMLDAIRSKDAADVCDRYRDSRQLHVPEDAPQCPMVIFVNSKSG GRHGPELKERLQQLMSEEQVFDLSDVKPHEFLRHGLVCLEKMAILGDLCAKECREKMRIMVAGGDGTVGWVLGCLAELHKEGRQPVPPVGIIPLGTGNDL SRSFGWGGSFPFAWKSAIKRSLDRAVAGPVCRLDSWQIVISMAGGEVVDAPYSLKATEECHLDQGLEVEGELSDKMACYEGEFYNYFSIGMDAQVAYGFH HLRNEKPYLAQGPIANKLIYSGYTCTQGWFLTPCINDPSLRGLKNILRMHIKRVNCSEWEQVPVPKSVRAIVCLNLHNYGSGRNPWGNPTADYLEKRGFV EAHVDDGLLEIFGLKQGWHASFVMVELISAKHIAQAAAIRLEIRGGEWRDAFLQMDGEPWKQPMSREYSSFVEIKRVQHQSVMISGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30340		ATDGK7	diacylglycerol kinase 7 (.1)		Lus10015514 [exp]	0	1
AT1G32130		HNI9, ATIWS1	HIGH NITROGEN INSENSITIVE 9, A...		Lus10030992 [exp]	2.4	0.9537
AT1G44770			unknown protein		Lus10034500 [exp]	2.6	0.9621
AT5G49710			unknown protein		Lus10015965 [exp]	3.7	0.9577
AT2G32210			unknown protein		Lus10003815 [exp]	4.9	0.9468
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10009376 [exp]	5.3	0.9535
AT2G36320			A20/AN1-like zinc finger famil...		Lus10003246 [exp]	6.7	0.9451
AT1G32130		HNI9, ATIWS1	HIGH NITROGEN INSENSITIVE 9, A...		Lus10035391 [exp]	9.2	0.9344
AT1G14720		ATXTH28, EXGT-A...	xyloglucan endotransglycosylas...		Lus10030760 [exp]	10.8	0.9381
AT1G04970			lipid-binding serum glycoprote...		Lus10033808 [exp]	11.3	0.9516
AT3G61540			alpha/beta-Hydrolases superfam...		Lus10001877 [exp]	12.1	0.9260

Compare expression of checked genes

Lus10015514 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.