Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15550 370 / 7e-124 IAGLU indole-3-acetate beta-D-glucosyltransferase (.1) AT1G05560 352 / 6e-117 UGT75B1, UGT1 UDP-GLUCOSE TRANSFERASE 1, UDP-glucosyltransferase 75B1 (.1) AT1G05530 344 / 6e-114 UGT75B2, UGT2 UDP-GLUCOSYL TRANSFERASE 2, UDP-glucosyl transferase 75B2 (.1) AT4G14090 340 / 4e-112 UDP-Glycosyltransferase superfamily protein (.1) AT2G31790 254 / 5e-79 UDP-Glycosyltransferase superfamily protein (.1) AT1G05675 251 / 8e-78 UDP-Glycosyltransferase superfamily protein (.1) AT3G21560 252 / 1e-77 UGT84A2 UDP-Glycosyltransferase superfamily protein (.1) AT2G43820 250 / 1e-77 SGT1, ATSAGT1, GT, UGT74F2 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) AT1G05680 244 / 5e-75 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1) AT2G43840 239 / 2e-73 UGT74F1 UDP-glycosyltransferase 74 F1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019989 [exp] 875 / 0 AT4G15550 379 / 5e-127 indole-3-acetate beta-D-glucosyltransferase (.1) Lus10021610 [exp] 602 / 0 AT1G05560 372 / 6e-125 UDP-GLUCOSE TRANSFERASE 1, UDP-glucosyltransferase 75B1 (.1) Lus10040591 [exp] 279 / 3e-92 AT4G14090 185 / 1e-56 UDP-Glycosyltransferase superfamily protein (.1) Lus10008742 [exp] 275 / 7e-87 AT2G43840 478 / 6e-167 UDP-glycosyltransferase 74 F1 (.1.2) Lus10009412 [exp] 263 / 2e-82 AT2G43820 474 / 1e-165 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10020556 [exp] 248 / 8e-77 AT2G43820 472 / 1e-164 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10010712 [exp] 246 / 9e-76 AT1G24100 462 / 1e-160 UDP-glucosyl transferase 74B1 (.1) Lus10006352 [exp] 243 / 2e-74 AT2G43820 414 / 6e-142 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10039041 [exp] 240 / 1e-73 AT1G05675 343 / 3e-114 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G236400 [exp] 426 / 1e-145 AT1G05560 442 / 1e-152 UDP-GLUCOSE TRANSFERASE 1, UDP-glucosyltransferase 75B1 (.1) Potri.002G236500 [exp] 426 / 2e-145 AT4G15550 436 / 3e-150 indole-3-acetate beta-D-glucosyltransferase (.1) Potri.014G146000 [exp] 422 / 4e-144 AT4G15550 429 / 2e-147 indole-3-acetate beta-D-glucosyltransferase (.1) Potri.006G055600 [exp] 393 / 7e-133 AT4G15550 442 / 2e-152 indole-3-acetate beta-D-glucosyltransferase (.1) Potri.016G052500 [exp] 384 / 4e-129 AT4G15550 419 / 3e-143 indole-3-acetate beta-D-glucosyltransferase (.1) Potri.004G083700 [exp] 315 / 1e-101 AT4G14090 374 / 3e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G101800 [exp] 312 / 2e-101 AT4G14090 369 / 3e-124 UDP-Glycosyltransferase superfamily protein (.1) Potri.015G071900 [exp] 270 / 5e-85 AT1G24100 427 / 5e-147 UDP-glucosyl transferase 74B1 (.1) Potri.007G140500 [exp] 262 / 6e-82 AT2G43840 463 / 3e-161 UDP-glycosyltransferase 74 F1 (.1.2) Potri.009G095500 [exp] 253 / 3e-78 AT2G23260 421 / 2e-144 UDP-glucosyl transferase 84B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10015515 pacid=23173601 polypeptide=Lus10015515 locus=Lus10015515.g ID=Lus10015515.BGIv1.0 annot-version=v1.0 ATGGCCGCCGTAACCAAACAACAACCACACATCGTGGTCGTAACATTCGCAGCACATGGCCATCTAAATCCGAGCCTTCATTTCTCCGAACGCTTGCTAC TCCTCGGTTGCCGTGTCACCCTCGTCACCACTGTTTCCGGCCACTCCCTTCTTGCCAACAAAAAAAGCTCCCTACCCGATGGCCTCTCGATCGCCACGTT TTCCGACGGTTACGACATTCCCGGGTCGCATCAAAAATCCAAGGATGATGAGAACAAGCAGTGGGTCCAGATGAACACCCGTGGGGCCGAATTCCTGAAC GAGTTAATCGCTACTAATTCCGATGAGGGGACCCCGATCTGTTGCTTGGTGTACACGCTACTGCTGACGTGGGTTGCGGATGTGGCGCGTGATAACAACC TCCCCTCGGTACTTCTCTGGATCCAACCGGCTACCGTCTTTGACATCTATTACTATCTCGCCAACGGCTACGAGGAGGCTTTCGAGAAATGCAGGAATCC GTCTTTCCGGTTAGAGTTACCTGGCATTCCGGTGAGCTTCACTAACGACGAACTTCCTTCTTTCGCCTCTCCTTGCAACCCACATCCTCTCTTGCGCCAA GCAATGATAGAACAAGTTAAAGTGTTGACCCGGGACGATGGTAACTCAAAAGTCTTGGTCAACACCTTTAACGAGTTGGAAGCAAAAGCCATAAATGCTT TAGACGTGAAATTCGAAATGATTGGAGTGGGCCCTTTAATTCCATCCACTTTAGTTAACCGGGCCCAATACTCCATTGCTAATGTTAATAATAGAGTACT TGGGATCAACACGGCCCAAGAGGATAAGAAGAAAGATTGTATTTTAACATGGCTAGACACGCAAGTCATGTCATCAATCATTTATGTCTCGTTTGGGACT ATGGCGGTAATATCAAGGAAGCAGAAGGAAGAAATCGGGAAGGCGTTATTGTGCAACAATAGACCATTCTTGTGGGTAATAAGAAAAGACGAGCACGGAA AAGAAGCGGAATTAGAAGAAGAGAGGAAGGAAATGGTGCGATGGAGAGAGGACATAGAAACAAAGGCCACGGTGGTTGGTGGGAAAATAGTTGAGTGGTG CTCACAAGTTGACGTGCTTTCACATGAAGCAATAGGATGTTTTGTGACACACTGTGGGTGGAATTCGACGTTAGAGGGAATGTGTTTGGGCGTACCACTA GTGGCTTTCCCTCAATTTTCCGACCAAACGACAAATGCGAAGCTGGTTGAGGACGTGTGGAAGATAGGGGTGCGGGTGGTGGTGGGGCAAGAGAAACGAA TTGCCTCCGATGAATCGGAGGAGGAGGTTACGATTAGTACGGTGGTGGAGGGAGATGAGATAAGGAGATGTTTGGATTTGGTAATGGGAGAAGGTCAAGT TAGGGAACAAATTAGGAAGAATGCAAATAAGTGGAAGCAACTTGCCATGGATGCGCTACGGGAGGGTGGCTCTTCACAGTCCAATCTCCAAGCTTTTGTC AACGAAGTTTACCAGTAA
AA sequence Show only first row Show all	>Lus10015515 pacid=23173601 polypeptide=Lus10015515 locus=Lus10015515.g ID=Lus10015515.BGIv1.0 annot-version=v1.0 MAAVTKQQPHIVVVTFAAHGHLNPSLHFSERLLLLGCRVTLVTTVSGHSLLANKKSSLPDGLSIATFSDGYDIPGSHQKSKDDENKQWVQMNTRGAEFLN ELIATNSDEGTPICCLVYTLLLTWVADVARDNNLPSVLLWIQPATVFDIYYYLANGYEEAFEKCRNPSFRLELPGIPVSFTNDELPSFASPCNPHPLLRQ AMIEQVKVLTRDDGNSKVLVNTFNELEAKAINALDVKFEMIGVGPLIPSTLVNRAQYSIANVNNRVLGINTAQEDKKKDCILTWLDTQVMSSIIYVSFGT MAVISRKQKEEIGKALLCNNRPFLWVIRKDEHGKEAELEEERKEMVRWREDIETKATVVGGKIVEWCSQVDVLSHEAIGCFVTHCGWNSTLEGMCLGVPL VAFPQFSDQTTNAKLVEDVWKIGVRVVVGQEKRIASDESEEEVTISTVVEGDEIRRCLDLVMGEGQVREQIRKNANKWKQLAMDALREGGSSQSNLQAFV NEVYQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Lus10015515 [exp]	0	1
AT4G23100		ATECS1, CAD2, G...	ROOT MERISTEMLESS 1, PHYTOALEX...		Lus10002001 [exp]	3.5	0.9274
AT4G37980		ELI3-1, ATCAD7	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10023268 [exp]	6.2	0.9276
AT5G65980			Auxin efflux carrier family pr...		Lus10012708 [exp]	11.4	0.9210
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10031609 [exp]	11.5	0.8859
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10009473 [exp]	17.4	0.9071
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10016461 [exp]	18.8	0.9208
AT5G45290			RING/U-box superfamily protein...		Lus10016428 [exp]	19.7	0.9146
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012011 [exp]	20.3	0.9089
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10033392 [exp]	22.8	0.8984
AT1G16310			Cation efflux family protein (...		Lus10009598 [exp]	26.7	0.9096

Compare expression of checked genes

Lus10015515 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.