Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57670 485 / 4e-166 Protein kinase superfamily protein (.2) AT2G18890 281 / 4e-89 Protein kinase superfamily protein (.1.2) AT5G65530 258 / 1e-79 Protein kinase superfamily protein (.1) AT3G05140 258 / 2e-79 RBK2 ROP binding protein kinases 2 (.1) AT5G10520 248 / 1e-75 RBK1 ROP binding protein kinases 1 (.1) AT5G35960 241 / 1e-73 Protein kinase family protein (.1) AT5G18910 243 / 4e-73 Protein kinase superfamily protein (.1) AT2G16750 186 / 2e-51 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G35030 183 / 2e-51 Protein kinase superfamily protein (.1.2.3) AT1G77280 172 / 2e-45 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019990 [exp] 973 / 0 AT5G57670 628 / 0.0 Protein kinase superfamily protein (.2) Lus10006957 [exp] 291 / 1e-93 AT2G18890 459 / 1e-162 Protein kinase superfamily protein (.1.2) Lus10018959 [exp] 252 / 1e-76 AT3G05140 512 / 8e-180 ROP binding protein kinases 2 (.1) Lus10035949 [exp] 247 / 9e-75 AT5G65530 521 / 0.0 Protein kinase superfamily protein (.1) Lus10008192 [exp] 242 / 2e-73 AT5G35960 489 / 4e-172 Protein kinase family protein (.1) Lus10012776 [exp] 241 / 2e-71 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10034000 [exp] 241 / 6e-71 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10012727 [exp] 236 / 8e-70 AT5G65530 457 / 8e-157 Protein kinase superfamily protein (.1) Lus10025713 [exp] 210 / 1e-61 AT5G65530 461 / 8e-161 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G096100 [exp] 669 / 0 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2) Potri.006G173700 [exp] 668 / 0 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2) Potri.018G091200 [exp] 305 / 2e-98 AT2G18890 469 / 8e-166 Protein kinase superfamily protein (.1.2) Potri.006G166600 [exp] 303 / 8e-98 AT2G18890 463 / 3e-163 Protein kinase superfamily protein (.1.2) Potri.013G028100 [exp] 263 / 5e-81 AT3G05140 548 / 0.0 ROP binding protein kinases 2 (.1) Potri.014G136300 [exp] 251 / 2e-77 AT5G35960 556 / 0.0 Protein kinase family protein (.1) Potri.007G011700 [exp] 253 / 3e-77 AT5G10520 552 / 0.0 ROP binding protein kinases 1 (.1) Potri.010G027301 [exp] 234 / 2e-69 AT5G18910 527 / 0.0 Protein kinase superfamily protein (.1) Potri.002G019300 [exp] 196 / 9e-54 AT4G35030 387 / 7e-127 Protein kinase superfamily protein (.1.2.3) Potri.004G175100 [exp] 186 / 5e-51 AT2G16750 564 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10015516 pacid=23173632 polypeptide=Lus10015516 locus=Lus10015516.g ID=Lus10015516.BGIv1.0 annot-version=v1.0 ATGGTCCCTCCTTCTTCTTCTTCTTCTTCTTCTTCAAAGATACTAATAGGCATTCCGTTAGATCCGGACGAGAGCAATGAGCTTCTGTCGTGGGCGATTC GAGTTCTTGCTACTCCAAATGACACCATTGTTGCAATCCATGTTGTTGTTGAGGAGGAGAAGGAATCAAAGAAGAAGAAGAAGAACAAGAAGAGGGGAAA CAAGAGGGTGCAGTCTAGAATTCGACAAGGGAAAGCCCATGTGATTTCTGTTCTTGGAGGGTATGCTTGGACTTGCCAATCTAAGCAGATAAATCTTGAA GCTAGAGTTGGTTTCAGTTCAAGTATTCAAGCTGGTCTAGTTCATGAATCCAAGTCCATTTCAGCCGACTACCTTGTTCTTCCTGGGTTACGAAATAAGT CAAACAGAACATGGCATGAGGTCATCAAGTTTTGTTTTGAGCATGCTCCTGAAGGATGTTCAGTCATCTCGATTGGCAAGTCTCAACAAGAACCACCTTC ACCACTACCAAATAGGAACTCTGCTCTCCTCAAAGAAGTTCATCAATCAAATTCAGAGTGGTTGAGGAATGGAAAAGATGACAGCATTGAAAATGGTTCA CCTAGGACAGTGTTGGATGAACTTGAAGGAGAATCATCATGTAACAGTACCACTGAAGACGAGATTACCAGCGTTTCCGATTTGACAGTCACAGGAACAG AATCGCCGATTTCTAAGGTGATTCACCACCAATCAAAGTCCAAAAGACAAATGTCTCCCTACAAGTTCATCAGCTCATTCTTGACTTCACCTCTAAGAAA AAGAACTTACAGCTTCTCTGGTAAACCTAAGCAACAACTACAGCAGCAGCAGCATCCAAATCCGCAGCAGGCCTTGTTGAAGTGCTTTAGCTACGACGAA ATCACCAGAGCCACCAACCATTTCGATCCAGGATACATTGTTGGAAGAGGAGGTTATTCAGAAGTGTACAGAGGTGATCTATGTGATGGAAGAACCATTG CAGTGAAAAGGCTAGCTAAGGATAACAAAGATGCTAACAAGGAGAAAGAGTTCCTCACTGAGTTAGGCATTCTTGGCCATGTATGCCATCCCAACACAGC AACTCTAGTAGGCTGCTGCATTGAGAATGGACTTTACTTAGTTTTTAGCTTCTCACAGAATGGAAACTTGTCATCAGCATTGCATGATGAAAGTGTCATG ATCTGTTGCATCCCAAATCCCAAAAACTCGAGTTGTTGGAAAAGGGTTCAGATAACTGATTTCGGGCTGGCAAAATGGCTTCCAAACAAATGGACGCACC ATGCTGTAATCCCAATTGAAGGAACATTTGGATACTTAGCTCCAGAGTACTTCATGCATGGGATTGTGGATGAGAAAACAGATGTATTTGCCTTTGGAGT TCTTCTCCTTGAGATCATTTCTGGAAGAAGGCCTGTTGATTCTTCAATGCAGAACCTTCTCTTATGGGCAAAGCCCCTGATGGAATCAGGGAATGTTGCT GCGCTTGCTGACTCGAAACTCGAAGGGAGATTCGAGGAATATCAGATGCACAGAGTTATGTTGACAGCTTCATACTGTGTTAGACAGTCTGCAGCCTGGA GACCATCAATGAGTGAGGTGTTGGAGCTTTTAACCTCTGCAGGTCAAGATTCTGAAGCTTTGACAACAAAGAGCGTTAGGATACCGAAGTTTACATCTGA TGAGCTGGATGATTTCTCCATGGTTTATGGGTATGATTTCCCCATTGATATAGACTTGGAAGAGTATTTGTAA
AA sequence Show only first row Show all	>Lus10015516 pacid=23173632 polypeptide=Lus10015516 locus=Lus10015516.g ID=Lus10015516.BGIv1.0 annot-version=v1.0 MVPPSSSSSSSSKILIGIPLDPDESNELLSWAIRVLATPNDTIVAIHVVVEEEKESKKKKKNKKRGNKRVQSRIRQGKAHVISVLGGYAWTCQSKQINLE ARVGFSSSIQAGLVHESKSISADYLVLPGLRNKSNRTWHEVIKFCFEHAPEGCSVISIGKSQQEPPSPLPNRNSALLKEVHQSNSEWLRNGKDDSIENGS PRTVLDELEGESSCNSTTEDEITSVSDLTVTGTESPISKVIHHQSKSKRQMSPYKFISSFLTSPLRKRTYSFSGKPKQQLQQQQHPNPQQALLKCFSYDE ITRATNHFDPGYIVGRGGYSEVYRGDLCDGRTIAVKRLAKDNKDANKEKEFLTELGILGHVCHPNTATLVGCCIENGLYLVFSFSQNGNLSSALHDESVM ICCIPNPKNSSCWKRVQITDFGLAKWLPNKWTHHAVIPIEGTFGYLAPEYFMHGIVDEKTDVFAFGVLLLEIISGRRPVDSSMQNLLLWAKPLMESGNVA ALADSKLEGRFEEYQMHRVMLTASYCVRQSAAWRPSMSEVLELLTSAGQDSEALTTKSVRIPKFTSDELDDFSMVYGYDFPIDIDLEEYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57670			Protein kinase superfamily pro...		Lus10015516 [exp]	0	1
AT5G62360			Plant invertase/pectin methyle...		Lus10038915 [exp]	2.2	0.8524
AT2G46910			Plastid-lipid associated prote...		Lus10000058 [exp]	10.2	0.7745
AT2G48150		ATGPX4	glutathione peroxidase 4 (.1)		Lus10042692 [exp]	10.4	0.8512
AT1G08810	MYB	ATMYB60	myb domain protein 60 (.1.2)		Lus10020343 [exp]	13.7	0.8470
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10042477 [exp]	20.7	0.6790
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Lus10014850 [exp]	22.4	0.8240
AT3G09870			SAUR-like auxin-responsive pro...		Lus10030263 [exp]	26.2	0.8328
AT1G17200			Uncharacterised protein family...		Lus10042471 [exp]	31.1	0.8326
AT2G36830		TIP1;1, GAMMA-T...	TONOPLAST INTRINSIC PROTEIN 1;...		Lus10023913 [exp]	31.7	0.8280
AT1G29930		LHCB1.3, CAB140...	LIGHT-HARVESTING CHLOROPHYLL A...		Lus10007362 [exp]	39.6	0.8276

Compare expression of checked genes

Lus10015516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.