Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15560 999 / 0 AtCLA1, DXS, DXPS2, DEF, CLA1 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) AT3G21500 867 / 0 DXPS1 1-deoxy-D-xylulose 5-phosphate synthase 1 (.1.2) AT5G11380 667 / 0 DXPS3 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) AT5G50850 62 / 6e-10 MAB1 MACCI-BOU, Transketolase family protein (.1) AT3G13450 52 / 8e-07 DIN4 DARK INDUCIBLE 4, Transketolase family protein (.1) AT1G55510 49 / 5e-06 BCDH BETA1, BCDHBETA1 branched-chain alpha-keto acid decarboxylase E1 beta subunit (.1) AT1G30120 45 / 0.0001 PDH-E1 BETA, PDH-E1BETA pyruvate dehydrogenase E1 beta (.1) AT2G34590 44 / 0.0003 Transketolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019991 [exp] 1439 / 0 AT4G15560 1018 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10001322 [exp] 1260 / 0 AT4G15560 1021 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10006984 [exp] 1249 / 0 AT4G15560 1023 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10012724 [exp] 1063 / 0 AT4G15560 1030 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10002663 [exp] 1058 / 0 AT4G15560 1026 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10012789 [exp] 977 / 0 AT4G15560 1229 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10033987 [exp] 916 / 0 AT4G15560 1134 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10019992 [exp] 777 / 0 AT4G15560 504 / 7e-171 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10015519 [exp] 775 / 0 AT4G15560 578 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G171700 [exp] 1172 / 0 AT4G15560 1037 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.007G058500 [exp] 1053 / 0 AT4G15560 999 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.008G196500 [exp] 981 / 0 AT4G15560 1207 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.010G015200 [exp] 980 / 0 AT4G15560 1227 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.006G249700 [exp] 710 / 0 AT5G11380 949 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) Potri.018G031800 [exp] 700 / 0 AT5G11380 958 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) Potri.003G166400 [exp] 61 / 1e-09 AT5G50850 636 / 0.0 MACCI-BOU, Transketolase family protein (.1) Potri.001G061400 [exp] 59 / 7e-09 AT5G50850 640 / 0.0 MACCI-BOU, Transketolase family protein (.1) Potri.004G129800 [exp] 48 / 2e-05 AT2G34590 634 / 0.0 Transketolase family protein (.1) Potri.017G076500 [exp] 47 / 4e-05 AT2G34590 671 / 0.0 Transketolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF00676 [flax] [poplar] E1_dh Dehydrogenase E1 component CL0254 [flax] [poplar] THDP-binding PF02779 [flax] [poplar] Transket_pyr Transketolase, pyrimidine binding domain CL0591 [flax] [poplar] TKC_like PF02780 [flax] [poplar] Transketolase_C Transketolase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10015517 pacid=23173681 polypeptide=Lus10015517 locus=Lus10015517.g ID=Lus10015517.BGIv1.0 annot-version=v1.0 ATGACTTCTTCAGTTTTGAGATCAACTTTTCTTCCTAATTTGATCCATTCTCAAGATGGCCAATCCTTCTCAAGCTTCTCTCCAAAACCCACCTCAGCCA CTCTCCGACCCAGAAAGAAGAGCAGAGGAGGCTTGGTGGCTGCAATGGAGAGTGATGATGTCAATGACAATAAGGTAGAGAAATACAATGAAATTACTAA GGAAAAGAGAACGCTTGACTTCTCAGGGAACAAGCCTTCCACTCCAATACTGGACACCATTAACTATCCAAACCACATGAACAATCTGTCAACTGAGGAG CTTGAGACATTGGCTGATGAGTTGAGGGAAGAGATTGTCTACTCTGTTTCCAAGACAGGTGGTCACCTTAGCTCAAGCTTGGGAGTTGCTGAACTCACTG TCGCCCTCCACCATGTTTTCAACACCCCCGAGGATAAGATCATCTGGGACGTTGGTCATCAGTCATACCCGCACAAGATATTAACCGGAAGAAGATCCAA GATGGGGTCAATCCGCCAGACATTCGGATTAGCAGGATTCCCAAAGAGGGACGAGAGTGAGCACGATGCATTTGGAGCTGGACACAGCTCCACAAGCATC TCAGCTGGATTAGGAATGGCTGTTGGTAGGGACTTGCTCGGGAAAAATAACCATGTGATTGCGGTCATAGGAGATGGAGCCATGACTGCTGGCCAAGCTT ATGAAGCAATGAACAATGCTGGTTACTTGGATTCCAATTTAATCATCATCTTGAATGACAACAAGCAAGTTTCTTTGCCAACCGCCACTGTCGATGGCCC TGCACCTCCTGTTGGAGCACTGAGCAAGGCTTTGACCAGGTTGCATTCGAGCCGAAAGCTTCGCCTGCTCAGGGAATCGGCCAAGGAGGTGACAAAAAAG ATTGGTGGGCCGAAAACATATGAAGTAGCAGCCAAAGTTGATTCCTATGTGAGAGGGATTTCAGGCGGGGCAGGAGCAAGCTTGTTTGAAGAGCTTGGAT TGTACTACATTGGACCTGTTGATGGACATGATGTTGAGGATCTTGTCTACTTGTTGAAGAAGATTAAAACAATGCCAGCACCTGGTCCTGTTCTCATTCA TGTTGTCACTGAGAAAGGGAAAGGCTATGCTCCAGCTGAATCTGCAGCAGATAAGATGCATGGTGTTGTCAAGTTTGATCCTTTGTCTGGGAAGCAAATC AAGACTAAGACTCCTACAAAGTCATACACTCAGTACTTTGCCGAGTCATTGATAGCTGAAGCAGAGAAAGATGAGAAGATTGTGGCAATCCATGCAGCAA TGGGAGGAGGGACAGGGCTTAATCTGTTCCAGAAACAGTTCCCGGAGAGAACTTTTGATGTTGGGATAGCAGAACAGCATGCTGTCACATTTGCTGCTGG TTTGGCAACTGAAGGTGTCAAGCCTTTCTGTACTATCTACTCATCTTTCCTCCAAAGGGGTTATGATCAGGTTGTTCACGATGTCGATCTTCAGAAGCTT CCGGTGAGGTTCGCAATCGACAGAGCTGGCCTCGTTGGTGCGGATGGACCGACACATTGTGGAGCCTTTGACACCACTTTCATGGCCTGCTTGCCAAACA TGGTGGTCATGGCTCCTTCTGATGAGACTGAGCTCATCCATATGGTTGCTACTGCTGCAGCCATCGATGATCGTCCGAGTTGCTTTAGGTACCCTAGAGG GAATGGAATTGGTACTGTTATTCCACAAAACAACAAAGGAACACCTCTTGAGGTTGGTAAGGGAAGAGTGCTGAGAGAAGGAAGTAGGGTTGCTATATTA GGGTATGGAACAATAGTACAGAACTGCATTGAAGCAGCTGACAAGCTTCAAGCACTGGGGATAAAGCCAACAGTGGCTGATGCTAGGTTCTGCAAGCCAC TTGATGGAGAGCTCATTAGAATGCTGGCTAAAGAACATGAAGTTCTTATCACTGTTGAGGAAGGTTCCATTGGAGGGTTCAGCTCTCATGTTTGCCATTA TTTGAGCTTGAATGGATTGCTTGATGGAAATCTCAAGTGGAGACCAATGTTGCTTCCAGACAGATACATTGACCATGGATCTCAAACTGATCAGATTGAA GCTGCTGGGCTGAGTTCTAAGCAGATTGCAGCTACTGTTCTTTCTCTCATTGGAGGTCACAAAGACAGCCTCCACATGATGGATATGTGA
AA sequence Show only first row Show all	>Lus10015517 pacid=23173681 polypeptide=Lus10015517 locus=Lus10015517.g ID=Lus10015517.BGIv1.0 annot-version=v1.0 MTSSVLRSTFLPNLIHSQDGQSFSSFSPKPTSATLRPRKKSRGGLVAAMESDDVNDNKVEKYNEITKEKRTLDFSGNKPSTPILDTINYPNHMNNLSTEE LETLADELREEIVYSVSKTGGHLSSSLGVAELTVALHHVFNTPEDKIIWDVGHQSYPHKILTGRRSKMGSIRQTFGLAGFPKRDESEHDAFGAGHSSTSI SAGLGMAVGRDLLGKNNHVIAVIGDGAMTAGQAYEAMNNAGYLDSNLIIILNDNKQVSLPTATVDGPAPPVGALSKALTRLHSSRKLRLLRESAKEVTKK IGGPKTYEVAAKVDSYVRGISGGAGASLFEELGLYYIGPVDGHDVEDLVYLLKKIKTMPAPGPVLIHVVTEKGKGYAPAESAADKMHGVVKFDPLSGKQI KTKTPTKSYTQYFAESLIAEAEKDEKIVAIHAAMGGGTGLNLFQKQFPERTFDVGIAEQHAVTFAAGLATEGVKPFCTIYSSFLQRGYDQVVHDVDLQKL PVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVMAPSDETELIHMVATAAAIDDRPSCFRYPRGNGIGTVIPQNNKGTPLEVGKGRVLREGSRVAIL GYGTIVQNCIEAADKLQALGIKPTVADARFCKPLDGELIRMLAKEHEVLITVEEGSIGGFSSHVCHYLSLNGLLDGNLKWRPMLLPDRYIDHGSQTDQIE AAGLSSKQIAATVLSLIGGHKDSLHMMDM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10015517 [exp]	0	1
AT3G10915			Reticulon family protein (.1.2...		Lus10034224 [exp]	4.7	0.9387
AT5G02580			Plant protein 1589 of unknown ...		Lus10025300 [exp]	7.1	0.8827
AT3G05660		AtRLP33	receptor like protein 33 (.1)		Lus10002214 [exp]	8.5	0.9261
					Lus10017445 [exp]	10.3	0.8824
AT4G34150			Calcium-dependent lipid-bindin...		Lus10019826 [exp]	11.4	0.8625
AT1G14820			Sec14p-like phosphatidylinosit...		Lus10034577 [exp]	14.0	0.9161
AT1G02305			Cysteine proteinases superfami...		Lus10007212 [exp]	14.0	0.9190
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10028284 [exp]	14.7	0.9019
AT3G07370		ATCHIP, CHIP	carboxyl terminus of HSC70-int...		Lus10025884 [exp]	18.5	0.9066
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Lus10020908 [exp]	19.7	0.9153

Compare expression of checked genes

Lus10015517 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.