Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15560 189 / 2e-56 AtCLA1, DXS, DXPS2, DEF, CLA1 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) AT3G21500 185 / 2e-55 DXPS1 1-deoxy-D-xylulose 5-phosphate synthase 1 (.1.2) AT5G11380 99 / 2e-24 DXPS3 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015517 [exp] 390 / 2e-133 AT4G15560 1020 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10019992 [exp] 388 / 2e-133 AT4G15560 504 / 7e-171 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10019991 [exp] 383 / 2e-130 AT4G15560 1018 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10001322 [exp] 255 / 1e-81 AT4G15560 1021 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10006984 [exp] 251 / 4e-80 AT4G15560 1023 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10012724 [exp] 212 / 4e-65 AT4G15560 1030 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10002663 [exp] 209 / 6e-64 AT4G15560 1026 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10033987 [exp] 190 / 5e-57 AT4G15560 1134 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10012789 [exp] 189 / 3e-56 AT4G15560 1229 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G171700 [exp] 247 / 3e-78 AT4G15560 1037 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.007G058500 [exp] 209 / 4e-64 AT4G15560 999 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.010G015200 [exp] 189 / 2e-56 AT4G15560 1227 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.008G196500 [exp] 185 / 5e-55 AT4G15560 1207 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.006G249700 [exp] 131 / 2e-35 AT5G11380 949 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) Potri.018G031800 [exp] 113 / 3e-29 AT5G11380 958 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015518 pacid=23173619 polypeptide=Lus10015518 locus=Lus10015518.g ID=Lus10015518.BGIv1.0 annot-version=v1.0 ATGACTTCTTCAGTTCTGAGATCAACTTTCCTTCCTAATTTGATCCATTCTCAAGATGCTCAATCTTTCTCAAGCTTCCCTCCAAAACCCACCTCAGCCA CTCTCCGACCCAGAAAGAAGAGCAGAGGAGGCCTGGTGGCTGCAATGGAGAGTGACGATGTCAATGACAATAAGGTAGAGAAATACAATGAAATTACTAA GGAAAAGAGAACGCTTGACTTCTCAGGGAACAAGCCTTCCACTCCAATTCTGGACACCATTAACTATCCAAATCACATGAACAATCTCTCAACTGAGGAG CTTGAAACATTGGCTGATGAGTTGAGGGAAGAGATTGTCTACTCTGTTTCCAAGACAGGTGGTCACCTTAGCTCAAGCTTGGGAGTTGCTGAACTCACTG TCGCCCTCCACCATGTTTTCAACACCCCCGAGGATAAGATCATCTGGGACGTTGGTCATCAGTCATACCCGCACAAGATATTAACCGGAAGAAGATCCAA GATGGGGTCCATCCGCCAGACATTCGGATTAGCAGGATTCCCAAAGAGGGACGAGAGTGAGCACGATGCATTGTGA
AA sequence Show only first row Show all	>Lus10015518 pacid=23173619 polypeptide=Lus10015518 locus=Lus10015518.g ID=Lus10015518.BGIv1.0 annot-version=v1.0 MTSSVLRSTFLPNLIHSQDAQSFSSFPPKPTSATLRPRKKSRGGLVAAMESDDVNDNKVEKYNEITKEKRTLDFSGNKPSTPILDTINYPNHMNNLSTEE LETLADELREEIVYSVSKTGGHLSSSLGVAELTVALHHVFNTPEDKIIWDVGHQSYPHKILTGRRSKMGSIRQTFGLAGFPKRDESEHDAL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10015518 [exp]	0	1
					Lus10026715 [exp]	2.2	0.9296
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10024882 [exp]	3.9	0.9022
AT2G02061			Nucleotide-diphospho-sugar tra...		Lus10031330 [exp]	5.5	0.9179
AT4G39660		AGT2	alanine:glyoxylate aminotransf...		Lus10004480 [exp]	7.3	0.8887
AT5G14000	NAC	ANAC084	NAC domain containing protein ...		Lus10012557 [exp]	9.2	0.9040
					Lus10005395 [exp]	9.6	0.9091
AT4G23740			Leucine-rich repeat protein ki...		Lus10039321 [exp]	11.3	0.8942
AT5G40710	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10032116 [exp]	18.0	0.8699
AT2G24300			Calmodulin-binding protein (.1...		Lus10019056 [exp]	19.5	0.8669
					Lus10033509 [exp]	19.6	0.8806

Compare expression of checked genes

Lus10015518 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.