Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30370 524 / 0 DLAH DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) AT1G06800 353 / 7e-118 PLA-I{gamma}1 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT2G30550 350 / 2e-116 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G51440 328 / 5e-108 alpha/beta-Hydrolases superfamily protein (.1) AT4G18550 239 / 1e-74 AtDSEL Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) AT2G44810 237 / 1e-74 DAD1 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) AT1G06250 239 / 2e-74 alpha/beta-Hydrolases superfamily protein (.1) AT4G16820 233 / 2e-71 PLA-I{beta]2 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) AT2G31100 227 / 4e-70 alpha/beta-Hydrolases superfamily protein (.1) AT1G05800 228 / 6e-70 DGL DONGLE, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038526 [exp] 825 / 0 AT1G30370 539 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10023280 [exp] 783 / 0 AT1G30370 537 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038524 [exp] 772 / 0 AT1G30370 526 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10023281 [exp] 496 / 3e-175 AT1G30370 342 / 2e-113 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10040158 [exp] 271 / 8e-86 AT4G16820 573 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10004364 [exp] 270 / 3e-85 AT4G16820 587 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10010997 [exp] 267 / 3e-84 AT4G16820 551 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10042914 [exp] 244 / 2e-76 AT2G44810 464 / 1e-163 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10017668 [exp] 241 / 2e-75 AT4G18550 420 / 1e-145 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G057900 [exp] 584 / 0 AT1G30370 626 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.001G263200 [exp] 577 / 0 AT1G30370 607 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.002G044700 [exp] 362 / 4e-121 AT1G06800 662 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.005G218500 [exp] 360 / 2e-120 AT1G06800 652 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G051900 [exp] 339 / 2e-112 AT1G51440 700 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G081500 [exp] 266 / 4e-84 AT4G16820 558 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Potri.001G153100 [exp] 265 / 1e-83 AT4G16820 575 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Potri.004G054800 [exp] 240 / 2e-75 AT4G18550 516 / 0.0 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.003G101800 [exp] 234 / 6e-73 AT2G42690 531 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G064400 [exp] 233 / 3e-72 AT4G18550 501 / 3e-177 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10015521 pacid=23173687 polypeptide=Lus10015521 locus=Lus10015521.g ID=Lus10015521.BGIv1.0 annot-version=v1.0 ATGACTCCCACGGTATCCCCCAAGAAGGACATCTCCGCCCAGTGGCGAGAGTTTCACGGCGAAGGTGACTGGACCGCTCTCCTGAGCCCGCTCCACCCTT GCCTCCGTCGTGAGATCATCAAGTATGGCGAGCTGGCCGTTGCCACCTACGACGGGTTCGACTTTGACCCGTTGTCTGAGTTCTGCGGGAGCTGTAAGTT CAACTGCAACAAGCTGCTCCATGAGTTGGGCCTCGAGAACAAGCACGGATACAATGCGACCCGATACATCTACGCCATGTCCCACGTGGATGTCCCTGAC TGGTTGTCGGAGACTTACACCACGTGGAGCAAGGACTCCAACTGGATGGGGTACGTGGCGGTCAGCGACGACCAAGAAACCAAACGAATCGGACGTAGGG ATATCGTCGTCGCGTGGCGAGGGACTGTAGCCCCAACTGAATGGTTTAGCGACATCAAAGCCAAGTTGGTACGAGTCAACGATGTCAAAGAAGTCAAAGT TCAAGAAGGGTTTCTCTCCCTTTACAAGTCCAAAGGCGAGTTCACCAGGTATAACAAATGGAGCGCTTCGGAACAAGTCATGGACGAGCTGGTCCGACTA GTCAAACTCTACAAAAATGAAAGGAAAGAAGAGATCAGCATAACCATAACTGGGCACAGCCTCGGAGGAGCGTTAGCTCTGCTAACGGCCTACGAGGCAT CAACTTTGATACCTGGAGTCTTCATCAGCGTGATATCCTTTGGAGCTCCAAGAGTTGGGAATTTGGCGTTCACGGAGAAGCTGACGAAGGAGCTTGGAGT CAAAGTCCTCAGAGTGGTCGTCGACCAGGACATTGTCCCTGATCTTCCGGGGCTCATAGTCAACGCAATTCTAAAGAAGGTGTGGCCAGGCAAGAGAATT AACTGGATTTATAGGCACGCCGGGACAGAGCTGAAGCTTGATATTGATGCGTCGCCTTATCTAAAGAAGGATTCTGATATCGCTGGCAGTCATAACATGG AGGTGTATATGCATCTGGTTGATGGGTTCGTTAGCGGCAAGTCCAAGTTTAGATGGAATGCGAGGAGGGATTTAGCGCTGGTGAATAAGGGTACGGATAG GTTGATCGATGAGCTCAAGATTCCCGAGTTCTGGTACGATATGCCGTACAAAGGACTTGTGTTGAATAAGCATGGGAGGTGGGTTAAACCGGGAAGGATG CTTGAAGATGTTCCTACTCCTTTATTTAGTGACGATTCCCGTCCTCGGCCTGTGCTTCAAGTTTTGGACGACTAG
AA sequence Show only first row Show all	>Lus10015521 pacid=23173687 polypeptide=Lus10015521 locus=Lus10015521.g ID=Lus10015521.BGIv1.0 annot-version=v1.0 MTPTVSPKKDISAQWREFHGEGDWTALLSPLHPCLRREIIKYGELAVATYDGFDFDPLSEFCGSCKFNCNKLLHELGLENKHGYNATRYIYAMSHVDVPD WLSETYTTWSKDSNWMGYVAVSDDQETKRIGRRDIVVAWRGTVAPTEWFSDIKAKLVRVNDVKEVKVQEGFLSLYKSKGEFTRYNKWSASEQVMDELVRL VKLYKNERKEEISITITGHSLGGALALLTAYEASTLIPGVFISVISFGAPRVGNLAFTEKLTKELGVKVLRVVVDQDIVPDLPGLIVNAILKKVWPGKRI NWIYRHAGTELKLDIDASPYLKKDSDIAGSHNMEVYMHLVDGFVSGKSKFRWNARRDLALVNKGTDRLIDELKIPEFWYDMPYKGLVLNKHGRWVKPGRM LEDVPTPLFSDDSRPRPVLQVLDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10015521 [exp]	0	1
AT2G42360			RING/U-box superfamily protein...		Lus10002194 [exp]	5.5	0.9853
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10032192 [exp]	5.9	0.9856
					Lus10010257 [exp]	11.0	0.9843
AT4G37290			unknown protein		Lus10010255 [exp]	11.1	0.9848
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10041830 [exp]	12.4	0.9822
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10041145 [exp]	12.5	0.9720
AT5G57510			unknown protein		Lus10017598 [exp]	14.5	0.9398
AT2G15220			Plant basic secretory protein ...		Lus10019807 [exp]	15.5	0.9560
AT5G37490			ARM repeat superfamily protein...		Lus10001079 [exp]	16.4	0.9834
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10028377 [exp]	18.0	0.9825

Compare expression of checked genes

Lus10015521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.