Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30210 911 / 0 AR2, ATR2 P450 reductase 2 (.1.2) AT4G24520 795 / 0 AR1, ATR1 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) AT3G02280 235 / 3e-68 Flavodoxin family protein (.1) AT1G30510 73 / 1e-13 ATRFNR2 root FNR 2 (.1.2.3) AT4G05390 69 / 2e-12 ATRFNR1 root FNR 1 (.1.2) AT5G66190 66 / 2e-11 ATLFNR1 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) AT1G20020 66 / 2e-11 ATLFNR2 ferredoxin-NADP\(+\)-oxidoreductase 2, LEAF FNR 2, ferredoxin-NADP(+)-oxidoreductase 2 (.1), ferredoxin-NADP(+)-oxidoreductase 2 (.2), ferredoxin-NADP(+)-oxidoreductase 2 (.3) AT1G75200 61 / 3e-09 flavodoxin family protein / radical SAM domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019996 [exp] 1267 / 0 AT4G30210 1013 / 0.0 P450 reductase 2 (.1.2) Lus10006972 [exp] 1018 / 0 AT4G30210 983 / 0.0 P450 reductase 2 (.1.2) Lus10032842 [exp] 721 / 0 AT4G24520 901 / 0.0 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Lus10025485 [exp] 697 / 0 AT4G30210 681 / 0.0 P450 reductase 2 (.1.2) Lus10002416 [exp] 363 / 1e-120 AT4G24520 474 / 1e-164 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Lus10025484 [exp] 309 / 2e-100 AT4G30210 318 / 2e-104 P450 reductase 2 (.1.2) Lus10017589 [exp] 172 / 1e-45 AT3G02280 810 / 0.0 Flavodoxin family protein (.1) Lus10033550 [exp] 69 / 9e-14 AT3G02280 121 / 7e-33 Flavodoxin family protein (.1) Lus10038538 [exp] 70 / 3e-12 AT4G05390 624 / 0.0 root FNR 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G092100 [exp] 973 / 0 AT4G30210 984 / 0.0 P450 reductase 2 (.1.2) Potri.006G167200 [exp] 964 / 0 AT4G30210 965 / 0.0 P450 reductase 2 (.1.2) Potri.005G153800 [exp] 830 / 0 AT4G24520 974 / 0.0 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.002G106566 [exp] 417 / 3e-142 AT4G24520 459 / 2e-159 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.002G106632 [exp] 283 / 3e-90 AT4G24520 269 / 1e-85 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.004G101100 [exp] 207 / 1e-57 AT3G02280 811 / 0.0 Flavodoxin family protein (.1) Potri.001G371900 [exp] 69 / 5e-12 AT4G05390 635 / 0.0 root FNR 1 (.1.2) Potri.005G112900 [exp] 68 / 8e-12 AT5G66190 576 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Potri.007G057200 [exp] 62 / 6e-10 AT5G66190 592 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Potri.011G027100 [exp] 57 / 2e-09 AT3G02280 144 / 2e-41 Flavodoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0076 [flax] [poplar] FAD_Lum_binding PF00667 [flax] [poplar] FAD_binding_1 FAD binding domain CL0091 [flax] [poplar] NAD_Ferredoxin PF00175 [flax] [poplar] NAD_binding_1 Oxidoreductase NAD-binding domain CL0042 [flax] [poplar] Flavoprotein PF00258 [flax] [poplar] Flavodoxin_1 Flavodoxin
Representative CDS sequence Show only first row Show all	>Lus10015525 pacid=23173617 polypeptide=Lus10015525 locus=Lus10015525.g ID=Lus10015525.BGIv1.0 annot-version=v1.0 ATGGATTCATCTTCGTCTGCATCGTCGGGGTCGCTGTTGTCGGCAATTGATATGCTGTCGGCAATTATCAGGGGCAAGACGGTTGACAACGCGGAGGCGG TGACTTCTATGATGACACTGGATAACAAGGAGTTCGTTATGATTCTCACTACTTCAATTGCCGTTCTGATCGGATGTGCGGTCGTACTCGTCTGGAGAAG ATCTACTCGGAAGGTGAAGAGCTTCGAGCCTCCCACGCCTTTGATTGTTAAGAAGAAGGAAGTGGAGGTGGTTGATGACGGCAAGACGAGAGTCACCGTG TTCTTCGGTACTCAGACTGGCACTGCTGAAGGATTCGCCAAGGCTTTAGTGGAGGAGGCCAAAGCGCGATATGAGAAAGCTGTGTTCACAGCCGTTGACT TGGATGACTATGCCGCGGATGACGACGAATACGAGGAGAAATTGAAGAGAGAGAATCTGGCTTTCTTCTTCCTCGCTACATATGGAGATGGTGAGCCTAC AGATAATGCGGCAAGGTTCTATAAGTGGTTTAGTGAGGGAAAAGAAGAGAGGGGAGAATGGCTTAAAATGAAGTACGGTGTGTTCGGCCTTGGCAACAAG CAATACGAACACTTTAATAAGATTGCTGTGGAGGTGGATGATCTTCTAGCCGAGCAAGGTGGGAAACGCCTGGTTCCTGTGGGTCTCGGAGATGATGATC AATGCATGGAGGATGACTTTACTGCTTGGAAAGAGTTGGTGTGGCCCGAGCTCGATGGATTGCTTCGCGATGAGGATGATCAAACATCGGCTGCTACGCC TTACACTGCAGCAGTATCGGAGTATAGGGTTGTGTTCTATGACACCACTGATGCGCCAGTAGAAGACAAAAGCTGGGGTAATGCCAATGGGCACACAGTG TATGATGCTCAACATCCATGCAGGGCTAATGTCGCTGTGAGGAAAGAGCTTCATACTTCTCTCTCTGACCGATCTTGCACTCATTTGGAATTTGACATTG CTGGCACTGGACTTTCATATGAAACTGGGGACCACCTTGGTGTGTACACTGAGAATGTTGAGGAGACTGTAGAAGAAGCACTGCAGTTGTTAGGTCTGTC ACCTGACACTTTCTTCTCTATCCATACTGACAACGAGGATGGGACACCTCTTAGCGGAGGCTCCTTGGCACCACCATTCCCAGCTTGCACATTGCGAACA GCTCTGACTCGATATGCTGATCTTCTGAATGCACCCAAAAAGTCTGCTTTGCTTGCTTTAGCTGCTCATGCTACTGATCCAACTGAAGCTGATAGATTGA GGCATCTCGCCTCACCTGGTGGAAAGGATGAATATGCAAAATGGATGGTTGCGGAACAGAGAAGTCTCCTTGAAGTTATGGCTGCCTTCCCCTCTGCAAG GCCCCCACTTGGCGTATTCTTCGCTGCAGTTGCCCCTCGCTTGTTACCGAGATTCTACTCCATCTCTTCATCTCCAAGCATGGCTCCATCTAGAATTCAT GTCACTTGTGCTCTGGTGCTTGAGAAAACACCCGGAGGACGGGTTCACAAGGGAGTATGCTCAACTTGGATGAAGAATACAATTCCTATGGAGAAGACCC AGGATTGCAGTTGGGCGCCTGTTTTCGTTCGGCAATCAAATTTCAGACTCCCAGTTGATACTAAAGTTCCCATCATAATGATTGGTCCCGGCACAGGGCT GGCTCCTTTCAGGGGCTTCCTTCAGGAAAGATTAGCACTCAAAGAGGCTGGATCCGATCTAGGGACCTCCATCTTCTTCTTTGGTTGCAGAAATCGTACT ACGGATTTTATCTACGAGGAAGAACTCAGCAACTTTGTCGAAACGGGTGCGCTTTCCGAGCTGGTTGTTGCCTTCTCCAGGGATGGGCCTACCAAAGAGT ATGTGCAGCATAAAATGATGCAGAAGGCTCAGGAAATCTGGAACCTGATATCTGAAGGAGCATACGTTTACGTATGTGGTGATGCCAAAGGCATGGCAAG AGACGTTCACCGAACTCTCCACACCATCGCGATAGAGCAGGGTAAGCTGGATACATCAAAGGCGGAGAGCTTAGTGAAAAGTCTGCAGATGAACGGCCGT TACCTACGTGATGTATGGTAA
AA sequence Show only first row Show all	>Lus10015525 pacid=23173617 polypeptide=Lus10015525 locus=Lus10015525.g ID=Lus10015525.BGIv1.0 annot-version=v1.0 MDSSSSASSGSLLSAIDMLSAIIRGKTVDNAEAVTSMMTLDNKEFVMILTTSIAVLIGCAVVLVWRRSTRKVKSFEPPTPLIVKKKEVEVVDDGKTRVTV FFGTQTGTAEGFAKALVEEAKARYEKAVFTAVDLDDYAADDDEYEEKLKRENLAFFFLATYGDGEPTDNAARFYKWFSEGKEERGEWLKMKYGVFGLGNK QYEHFNKIAVEVDDLLAEQGGKRLVPVGLGDDDQCMEDDFTAWKELVWPELDGLLRDEDDQTSAATPYTAAVSEYRVVFYDTTDAPVEDKSWGNANGHTV YDAQHPCRANVAVRKELHTSLSDRSCTHLEFDIAGTGLSYETGDHLGVYTENVEETVEEALQLLGLSPDTFFSIHTDNEDGTPLSGGSLAPPFPACTLRT ALTRYADLLNAPKKSALLALAAHATDPTEADRLRHLASPGGKDEYAKWMVAEQRSLLEVMAAFPSARPPLGVFFAAVAPRLLPRFYSISSSPSMAPSRIH VTCALVLEKTPGGRVHKGVCSTWMKNTIPMEKTQDCSWAPVFVRQSNFRLPVDTKVPIIMIGPGTGLAPFRGFLQERLALKEAGSDLGTSIFFFGCRNRT TDFIYEEELSNFVETGALSELVVAFSRDGPTKEYVQHKMMQKAQEIWNLISEGAYVYVCGDAKGMARDVHRTLHTIAIEQGKLDTSKAESLVKSLQMNGR YLRDVW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Lus10015525 [exp]	0	1
AT5G35960			Protein kinase family protein ...		Lus10008192 [exp]	1.0	0.9102
AT3G27000		ATARP2, WRM, AR...	WURM, actin related protein 2 ...		Lus10041069 [exp]	1.4	0.8982
AT1G15880		ATGOS11, GOS11	golgi snare 11 (.1)		Lus10026058 [exp]	6.0	0.8688
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10039569 [exp]	8.0	0.8533
AT2G20650			RING/U-box superfamily protein...		Lus10039848 [exp]	21.4	0.8814
AT5G10840			Endomembrane protein 70 protei...		Lus10000222 [exp]	23.0	0.8371
AT5G27490			Integral membrane Yip1 family ...		Lus10015189 [exp]	25.0	0.8363
AT1G28240			Protein of unknown function (D...		Lus10015438 [exp]	27.4	0.8317
AT1G49740			PLC-like phosphodiesterases su...		Lus10012665 [exp]	28.0	0.7793
AT1G15880		ATGOS11, GOS11	golgi snare 11 (.1)		Lus10014349 [exp]	28.2	0.8395

Compare expression of checked genes

Lus10015525 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.