Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57410 528 / 0 Afadin/alpha-actinin-binding protein (.1.2.3) AT2G18876 526 / 0 Afadin/alpha-actinin-binding protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019997 [exp] 492 / 9e-176 AT5G57410 417 / 2e-146 Afadin/alpha-actinin-binding protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G092000 [exp] 580 / 0 AT5G57410 610 / 0.0 Afadin/alpha-actinin-binding protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11559 [flax] [poplar] ADIP Afadin- and alpha -actinin-Binding
Representative CDS sequence Show only first row Show all	>Lus10015526 pacid=23173622 polypeptide=Lus10015526 locus=Lus10015526.g ID=Lus10015526.BGIv1.0 annot-version=v1.0 ATGGCGACAATAGCCGACTCCGGCTTGGATCTAGGAGCTTCTGCTTCCTTCTCGTTCTCCTCCGTCGGGGAGAACAAGTTTGCTGATACTGGCAACTTGG AGCACTGCGCCAAGTACTTGAACCAAACGCTTGTAACATTTGGATTTCCTGCTTCACTTGATCTCTTCGCCAATGATCCGGTGTCGATTGCTCGGACCTG CAATTGCATTTACTTTTTGCTCCAGATGAGGCAGCGAGACATTGAGTTTCGAGAGTCTGCCAATGATCAAAGACAGAGACTGTCGTCGGATATATCGAGA TTGGAGGCGAAGGTTGAGAGACTTGAGTCGCAGCTAGAAGTAAAGGAAAGGGAAATAGCCACCATTACTAGAACGGCAGCTAAGGCTACAGCAGCATTCA AGGCTCAGATTGAAAAGCTTCAACAGGAACGTGACGAGTTTCAAAGGATGGTGATTGGTAATCAGCAAGTGAGAACTCAACAAATACATGAAATGAAGAA GAGAGAAAAGGAGTACATTAAGCTACAGGAGAAGCTAAATCAAGTTCTGATGGAGAAAAAGAAGGAATCCAGATCAGGCATGGAGATTATGAATTTGCTT CAGAAAGAAGGACGTCAACGAGGGACTTGGAATGGGAAGAAGACTGATAATGACTTCTATAAGAAAATTGTCGATGCGTATGAGGCTAAAAATCAGGAGC TGATGAATGAGAATTCTGATTTGAGGACATTGCTGCGGTCAATGCAGGCTGACATGCGTGATTTCATAAATGCCCCAAATGGTTCGTCCAACCAGTCCAT GGCAGTAAATGACCGACCTGAAGTTGACCCAAGTCAATCTCCCATGGGAGGAAGGACGGATTTGTTTGATCTGCCTTTTCACATGGCTAGGGATCACATT GAAGAAAGCCTTCGAGCGAAGATGACATCAATAAAGGAGCGTATGGGCCAATTACAAGATGCGCAGAAGGAAGCAGAAGTGACTTCGGAAGTTTCTGAAA GAGAACTTGAGCTTGAAGCTCAACTTGTCGAAGCAAGGAGCATTATTGAAGAGCAGGCGTCCATAATGTCTAAGCATCTCGCCAAGTCAGACAAGCCAAG GTATAGTCGATTCACATTCCTCATCTTGCTCGTTTTAACAATTTAA
AA sequence Show only first row Show all	>Lus10015526 pacid=23173622 polypeptide=Lus10015526 locus=Lus10015526.g ID=Lus10015526.BGIv1.0 annot-version=v1.0 MATIADSGLDLGASASFSFSSVGENKFADTGNLEHCAKYLNQTLVTFGFPASLDLFANDPVSIARTCNCIYFLLQMRQRDIEFRESANDQRQRLSSDISR LEAKVERLESQLEVKEREIATITRTAAKATAAFKAQIEKLQQERDEFQRMVIGNQQVRTQQIHEMKKREKEYIKLQEKLNQVLMEKKKESRSGMEIMNLL QKEGRQRGTWNGKKTDNDFYKKIVDAYEAKNQELMNENSDLRTLLRSMQADMRDFINAPNGSSNQSMAVNDRPEVDPSQSPMGGRTDLFDLPFHMARDHI EESLRAKMTSIKERMGQLQDAQKEAEVTSEVSERELELEAQLVEARSIIEEQASIMSKHLAKSDKPRYSRFTFLILLVLTI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57410			Afadin/alpha-actinin-binding p...		Lus10015526 [exp]	0	1
AT5G57410			Afadin/alpha-actinin-binding p...		Lus10019997 [exp]	1.0	0.9451
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Lus10002230 [exp]	1.4	0.9243
AT2G22560			Kinase interacting (KIP1-like)...		Lus10025717 [exp]	1.7	0.9151
					Lus10035688 [exp]	2.0	0.9079
AT4G35170			Late embryogenesis abundant (L...		Lus10022644 [exp]	4.2	0.9012
AT4G02980		ABP1	endoplasmic reticulum auxin bi...		Lus10027985 [exp]	4.4	0.8750
AT4G28950		ATRAC7, ARAC7, ...	Arabidopsis RAC-like 7, RHO-re...		Lus10034932 [exp]	5.0	0.9014
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10043441 [exp]	7.5	0.8792
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Lus10015561 [exp]	10.0	0.8735
AT3G53730			Histone superfamily protein (....		Lus10004949 [exp]	10.6	0.8884

Compare expression of checked genes

Lus10015526 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.