Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57500 446 / 1e-158 Galactosyltransferase family protein (.1) AT3G06440 54 / 8e-08 Galactosyltransferase family protein (.1.2) AT1G74800 42 / 0.0004 Galactosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019998 [exp] 529 / 0 AT5G57500 475 / 3e-170 Galactosyltransferase family protein (.1) Lus10006963 [exp] 444 / 1e-157 AT5G57500 470 / 2e-168 Galactosyltransferase family protein (.1) Lus10000372 [exp] 292 / 4e-98 AT5G57500 300 / 2e-101 Galactosyltransferase family protein (.1) Lus10000407 [exp] 211 / 8e-68 AT5G57500 211 / 2e-68 Galactosyltransferase family protein (.1) Lus10006531 [exp] 193 / 1e-60 AT5G57500 202 / 1e-64 Galactosyltransferase family protein (.1) Lus10025474 [exp] 159 / 7e-48 AT5G57500 199 / 4e-64 Galactosyltransferase family protein (.1) Lus10032650 [exp] 47 / 1e-05 AT3G06440 659 / 0.0 Galactosyltransferase family protein (.1.2) Lus10043102 [exp] 42 / 0.0005 AT3G06440 575 / 0.0 Galactosyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G094000 [exp] 432 / 4e-153 AT5G57500 493 / 3e-177 Galactosyltransferase family protein (.1) Potri.007G131000 [exp] 305 / 3e-102 AT5G57500 289 / 2e-96 Galactosyltransferase family protein (.1) Potri.010G151600 [exp] 49 / 2e-06 AT3G06440 702 / 0.0 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01762 [flax] [poplar] Galactosyl_T Galactosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10015527 pacid=23173577 polypeptide=Lus10015527 locus=Lus10015527.g ID=Lus10015527.BGIv1.0 annot-version=v1.0 ATGAAGCTCCCCACAAAACCATACTCCCGCAATCGCCCATTTATCCTCTCCTCTTTAACCTTCATCTTCTTCTTCTGCCTCTTAGCCTCCGTCAACCAAA TCCGGTTCGACCAGCTCTTAAATCTCGGCCAGTGCGCTCTCTCCAAATTCCAACCTTCTATCACTACTACAACCGCCCTCTCGTCCTCCTCGTCCTCCTT AATCTCTAACGTAGAGACCGAGGAGGAGGAGGAGATCCGCATTCTCATGGGGATCCTTACCCTCCCCGACCACTACCACAAGCGTCATTTCCTCCGCATG ATCTACGGGACCCAGCAACCCCCACGAGGCACGAAAATCGACGTGAAGTTTGTGTTCTGCAACCTCACTAAAGAAGACCAGAAAGTCCTGGTGGCGCTCG AGATCATGAGATATGACGACATAATCATCCTCAACTGTAAGGAGAACATGAACAACGGTAAGACCTACACGTACTTCTCTAGCCTCCCCGACATTTTCTC GGATACTACAAGTGACGCATCATCGTCGACATCCCCACCTTACCACTATGTCATGAAGGCAGACGATGACTCGTACTTCCGCCTGGGAAGCCTAGCGTCG TCGTTGAGGCCACTCCCCCGGGACGATTTCTACTATGGTTATGTTATCCCTTGCCCCAGTATGGACCCGTTTGTGAATTACATGTCCGGGATGGGGTACT TGGTGTCGTGGGATATCGCAGAGTGGATCAAGGATTCGGATATCCCTAGGAGGAATCTGGTGGGACCCGAGGATAAGGTATTCGGGCAATGGTTGAGAGA AGGTCGGAAGGCGAGGAATCGATACAATGCTAAGTGGTCGATGTATAACTTTCCGATACCGCCGACCGGTTGTACGCACGAGCTTTGGCCGGACACGGTG GCGGTGCATTTGCTGAAGACTCAAGAGAAGTGGATTCAGACTTTGGATTATTTCAACGTTACTAAAGATCTTAAGCCTTCCAAGCTATATCATATCCCTT AA
AA sequence Show only first row Show all	>Lus10015527 pacid=23173577 polypeptide=Lus10015527 locus=Lus10015527.g ID=Lus10015527.BGIv1.0 annot-version=v1.0 MKLPTKPYSRNRPFILSSLTFIFFFCLLASVNQIRFDQLLNLGQCALSKFQPSITTTTALSSSSSSLISNVETEEEEEIRILMGILTLPDHYHKRHFLRM IYGTQQPPRGTKIDVKFVFCNLTKEDQKVLVALEIMRYDDIIILNCKENMNNGKTYTYFSSLPDIFSDTTSDASSSTSPPYHYVMKADDDSYFRLGSLAS SLRPLPRDDFYYGYVIPCPSMDPFVNYMSGMGYLVSWDIAEWIKDSDIPRRNLVGPEDKVFGQWLREGRKARNRYNAKWSMYNFPIPPTGCTHELWPDTV AVHLLKTQEKWIQTLDYFNVTKDLKPSKLYHIP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57500			Galactosyltransferase family p...		Lus10015527 [exp]	0	1
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10021212 [exp]	7.1	0.7736
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029580 [exp]	7.7	0.7489
AT3G57280			Transmembrane proteins 14C (.1...		Lus10031047 [exp]	9.5	0.7741
AT2G19590		ATACO1, ACO1	ACC oxidase 1 (.1)		Lus10008564 [exp]	15.7	0.7851
AT5G12470			Protein of unknown function (D...		Lus10009956 [exp]	17.7	0.7547
AT3G17130			Plant invertase/pectin methyle...		Lus10002739 [exp]	17.9	0.7719
AT2G15780			Cupredoxin superfamily protein...		Lus10025269 [exp]	22.9	0.7365
AT4G10265			Wound-responsive family protei...		Lus10039761 [exp]	25.4	0.7335
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Lus10018621 [exp]	25.5	0.7407
AT5G44730			Haloacid dehalogenase-like hyd...		Lus10001353 [exp]	30.7	0.7416

Compare expression of checked genes

Lus10015527 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.