Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25830 48 / 9e-07 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019999 [exp] 0 / 1 AT4G25830 154 / 2e-47 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G094500 [exp] 71 / 8e-15 AT4G25830 128 / 9e-38 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10015528 pacid=23173651 polypeptide=Lus10015528 locus=Lus10015528.g ID=Lus10015528.BGIv1.0 annot-version=v1.0 ATGACGAAGAAGATCAATGGAGGAGCTACGGTGGTGGAGTGTGGGCTGAGAGTCGGAGCTGTATTAACGCTGGTAGCAACAGCATGTCTGGTTGGATTTG ATTCTGAAACAGAGTTCGTTTTGTTTCTGGAACAAAGGGTCACTTACAAGAACTTGAATTCCCTCATGGCTTTGGTGTATGTGGATATTGTGGCTGCTGT ATACAACTTCACTCGACTTGCAATATCTATCCTACTAATGATCAGCAGACGGAGATCTTCACCAAGTAAGTTGAGTACTAGTGCTGCGACGTCGCCGTCG TCGTCGTCTATGGCGGTTCAGTTACGTCGGCCCCCGATCATATGCTCCTGGCTTGCCTTTATCTTCGACCAGGGTGGTTTGGTAAAATTGGCTGATGCAG GTGGGGGTATATGTGACATTTGCGGCGACGACAGCAGCTATGCAGCACTCGACGATGGTGATGACAGGGGAAAGCGATCTGCAATGGCTGAAATGGTGCA ACAAGTTCACCAGATTTTGCGTACAGATAGGAGGAGGCCTCTTCTCCAGTTTTCTAGCTTCAATTCTAATGGCGTTGCTTTCTTTCGTATCCGCCTTCCG GTTATTCAGACTCTACTCATCCAACCGCTTCCTCCGTCTCAAGTCCTCCTCCTCACCACCGCCGCTCTCAATGCCCTCGTCGTCATTGTGAATACTACAC TGAGTATATATGTACATTTCGAATTGATTTGA
AA sequence Show only first row Show all	>Lus10015528 pacid=23173651 polypeptide=Lus10015528 locus=Lus10015528.g ID=Lus10015528.BGIv1.0 annot-version=v1.0 MTKKINGGATVVECGLRVGAVLTLVATACLVGFDSETEFVLFLEQRVTYKNLNSLMALVYVDIVAAVYNFTRLAISILLMISRRRSSPSKLSTSAATSPS SSSMAVQLRRPPIICSWLAFIFDQGGLVKLADAGGGICDICGDDSSYAALDDGDDRGKRSAMAEMVQQVHQILRTDRRRPLLQFSSFNSNGVAFFRIRLP VIQTLLIQPLPPSQVLLLTTAALNALVVIVNTTLSIYVHFELI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25830			Uncharacterised protein family...		Lus10015528 [exp]	0	1
AT4G25830			Uncharacterised protein family...		Lus10019999 [exp]	1.0	0.9677
AT2G32640			Lycopene beta/epsilon cyclase ...		Lus10015142 [exp]	4.2	0.9079
AT1G08810	MYB	ATMYB60	myb domain protein 60 (.1.2)		Lus10009522 [exp]	4.6	0.8986
AT1G13820			alpha/beta-Hydrolases superfam...		Lus10037072 [exp]	6.3	0.8935
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10000754 [exp]	9.2	0.8621
AT1G74875			unknown protein		Lus10023768 [exp]	11.8	0.8489
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016499 [exp]	12.7	0.8398
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10013395 [exp]	13.0	0.8378
AT5G47180			Plant VAMP (vesicle-associated...		Lus10011004 [exp]	14.4	0.8481
AT4G04750			Major facilitator superfamily ...		Lus10033795 [exp]	14.7	0.8581

Compare expression of checked genes

Lus10015528 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.