Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30270 345 / 1e-118 XTH24, SEN4, BRU1, MERI-5, MERI5B SENESCENCE 4, meristem-5, MERISTEM 5, xyloglucan endotransglucosylase/hydrolase 24 (.1) AT2G18800 338 / 1e-115 ATXTH21, XTH21, XTR17 xyloglucan endotransglucosylase/hydrolase 21 (.1) AT5G57550 333 / 1e-113 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1) AT4G25810 332 / 4e-113 XTH23, XTR6 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) AT5G57560 329 / 3e-112 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT5G48070 316 / 6e-107 XTH20, ATXTH20 xyloglucan endotransglucosylase/hydrolase 20 (.1) AT5G57530 309 / 2e-104 AtXTH12, XTH12 xyloglucan endotransglucosylase/hydrolase 12 (.1) AT4G14130 309 / 3e-104 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT5G57540 305 / 9e-103 AtXTH13, XTH13 xyloglucan endotransglucosylase/hydrolase 13 (.1) AT1G65310 303 / 4e-102 XTH17, XTR1, ATXTH17 xyloglucan endotransglucosylase/hydrolase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020000 [exp] 509 / 0 AT4G30270 347 / 3e-121 SENESCENCE 4, meristem-5, MERISTEM 5, xyloglucan endotransglucosylase/hydrolase 24 (.1) Lus10000678 [exp] 325 / 1e-110 AT3G23730 410 / 6e-146 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10021638 [exp] 323 / 1e-109 AT3G23730 413 / 7e-147 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10020773 [exp] 320 / 2e-108 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10007349 [exp] 318 / 1e-107 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10020772 [exp] 318 / 1e-107 AT3G23730 393 / 7e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10028947 [exp] 311 / 3e-105 AT4G14130 437 / 2e-156 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Lus10030484 [exp] 311 / 4e-105 AT4G25810 398 / 9e-141 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Lus10023221 [exp] 311 / 9e-105 AT3G23730 376 / 4e-132 xyloglucan endotransglucosylase/hydrolase 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G094900 [exp] 341 / 7e-117 AT4G25810 410 / 8e-146 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G095100 [exp] 336 / 9e-115 AT4G25810 420 / 1e-149 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.013G005700 [exp] 335 / 1e-113 AT4G25810 431 / 5e-153 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G095200 [exp] 332 / 2e-113 AT4G25810 414 / 3e-147 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G094800 [exp] 327 / 4e-111 AT4G25810 413 / 1e-146 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.005G007200 [exp] 319 / 4e-108 AT4G25810 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.014G146100 [exp] 318 / 9e-108 AT3G23730 451 / 1e-161 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.002G236200 [exp] 316 / 6e-107 AT3G23730 436 / 1e-155 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.005G201250 [exp] 313 / 1e-105 AT4G14130 395 / 2e-139 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.005G201200 [exp] 313 / 1e-105 AT4G14130 405 / 2e-143 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0063 [flax] [poplar] NADP_Rossmann PF00743 [flax] [poplar] FMO-like Flavin-binding monooxygenase-like CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10015529 pacid=23173592 polypeptide=Lus10015529 locus=Lus10015529.g ID=Lus10015529.BGIv1.0 annot-version=v1.0 ATGCTAGTTGTATGCACCGGGAAATTCGGAGATGTAGCGAAGATACCGGAGTTCCCGAGGAACAGAGGCCCCGGAGTATTCAAAGGGAAGGTGATGCATA CAATGGATTACTGCAAACTGGACAAGGATGAAGCAACAGAGCTAATGACGGGCAAGAATGTGGCGATCGTTGGGTTCAAAAAATCGGCTCTCGATTTAGC AGTTGAATGCGCCGAAGCAAACCAAGGTCCGGAAGGGAAGGCATGTACGATGGTGATAAGGACCTTGCACTGGACTATCTCAGATTACTGGGTTTGGGGA TTGCCACTCTTCTTCTTCTTCTTTTCCACCAGATCCTCCCACAGTTCATCAATCCAAGACCTAACCAAGGCCTTCTTAGGACCTTATTCTGCCTTCTCGC ATCACCCTTGTAACTTCCAAGATGACATCGCTGTGACATTCGGAGACGGCCGTGTCAGAATCCAAGACGGCGGCAACCTTATGAGTCTGTCCCTCGACAA CTCTTCCGGGTCGGGATTTCAGTCCAAAGCCGACTTCCTCTACGCCAAAGTCGACATGAAGATTAAACTCGTCCCCGGTGACTCTGCTGGCACTGTCACC TCCTTCTACTTGAAATCACAAGGGACGACATGGGACGAGATAGACATGGAATTCCTGGGCAACACAAGCGGCGACCCATACGTCCTCCACACGAACGTCT TCGTGAACGGCAACGGCAACAGAGAACAACAATTCAACCTCTGGTTCGACCCGACAACCGATTTCCATTCCTACTCAATCATATGGAACCCTTCCCACAT AGTCCTCGTAGTGGACGACAAGCCCCTCAGGGAGTACCGAAACCTCCAGCCCATGAACGTTCCCTACCCAACGGCCCAGCCCATGAAGCTTTACGGGTCA ATTTGGAACGCCGATGATTGGGCCACCCGTGGCGGACGGGTAAAGACCGATTGGTCCAAAGCGCCTTTCACCGCCTCCTTCAGTAACTACAACGCCGACG GCAACAAAAACGCCCCGTGGTACTCCGTGGAGAGGCTTGACGGCGACTCCGTGAAACAGATGGAGTGGGTTCAGAAGAATTACATGGTGTACAACTACTG TTCTGACCCTAGTCGGTTTCCTGGCGGGTTGCCAGCGGAATGTAACGTCGGCAAAAACTAA
AA sequence Show only first row Show all	>Lus10015529 pacid=23173592 polypeptide=Lus10015529 locus=Lus10015529.g ID=Lus10015529.BGIv1.0 annot-version=v1.0 MLVVCTGKFGDVAKIPEFPRNRGPGVFKGKVMHTMDYCKLDKDEATELMTGKNVAIVGFKKSALDLAVECAEANQGPEGKACTMVIRTLHWTISDYWVWG LPLFFFFFSTRSSHSSSIQDLTKAFLGPYSAFSHHPCNFQDDIAVTFGDGRVRIQDGGNLMSLSLDNSSGSGFQSKADFLYAKVDMKIKLVPGDSAGTVT SFYLKSQGTTWDEIDMEFLGNTSGDPYVLHTNVFVNGNGNREQQFNLWFDPTTDFHSYSIIWNPSHIVLVVDDKPLREYRNLQPMNVPYPTAQPMKLYGS IWNADDWATRGGRVKTDWSKAPFTASFSNYNADGNKNAPWYSVERLDGDSVKQMEWVQKNYMVYNYCSDPSRFPGGLPAECNVGKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30270		XTH24, SEN4, BR...	SENESCENCE 4, meristem-5, MERI...		Lus10015529 [exp]	0	1

Compare expression of checked genes

Lus10015529 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.