Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57360 944 / 0 LKP1, FKL2, ADO1, ZTL ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT2G18915 832 / 0 ADO2, LKP2 ADAGIO 2, LOV KELCH protein 2 (.1.2) AT1G68050 737 / 0 ADO3, FKF1 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) AT1G51550 106 / 3e-24 Kelch repeat-containing F-box family protein (.1) AT5G58140 92 / 2e-19 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT3G45780 88 / 8e-18 RPT1, NPH1, JK224, PHOT1 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) AT2G02710 78 / 3e-15 PLPC, PLPB, PLPA, PLP PAS/LOV PROTEIN C, PAS/LOV PROTEIN A, PAS/LOV protein B (.1.2.3) AT2G27210 78 / 1e-14 BSL3 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) AT1G08420 78 / 1e-14 BSL2 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) AT5G04420 76 / 4e-14 Galactose oxidase/kelch repeat superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025470 [exp] 996 / 0 AT5G57360 1031 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10006959 [exp] 989 / 0 AT5G57360 1024 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10020003 [exp] 742 / 0 AT5G57360 790 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10019169 [exp] 729 / 0 AT1G68050 969 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10029002 [exp] 706 / 0 AT1G68050 935 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10013237 [exp] 692 / 0 AT1G68050 940 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10030757 [exp] 687 / 0 AT1G68050 935 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10034827 [exp] 104 / 1e-23 AT1G51550 504 / 5e-177 Kelch repeat-containing F-box family protein (.1) Lus10033377 [exp] 102 / 6e-23 AT1G51550 496 / 5e-174 Kelch repeat-containing F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G090800 [exp] 1000 / 0 AT5G57360 1042 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.006G166300 [exp] 987 / 0 AT5G57360 972 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G105700 [exp] 751 / 0 AT1G68050 977 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Potri.008G135200 [exp] 744 / 0 AT1G68050 968 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Potri.008G006300 [exp] 122 / 1e-29 AT1G51550 496 / 1e-173 Kelch repeat-containing F-box family protein (.1) Potri.010G252200 [exp] 122 / 2e-29 AT1G51550 500 / 3e-175 Kelch repeat-containing F-box family protein (.1) Potri.004G209700 [exp] 92 / 5e-19 AT5G58140 1332 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.001G342000 [exp] 89 / 5e-18 AT3G45780 1388 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Potri.009G170640 [exp] 85 / 7e-17 AT5G58140 825 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.010G230300 [exp] 77 / 1e-14 AT5G04420 657 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF07646 [flax] [poplar] Kelch_2 Kelch motif CL0183 [flax] [poplar] PAS_Fold PF00989 [flax] [poplar] PAS PAS fold CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10015531 pacid=23173605 polypeptide=Lus10015531 locus=Lus10015531.g ID=Lus10015531.BGIv1.0 annot-version=v1.0 ATGGAATGGGATAGCAGCAATTCGGATCTGAGCGGCGACGACGATGAGGAGGAGAGCTTCGACTTTGGCCAATCAGGTGCTCCGATCTCTTCCCCTGTCG AGATCTTGCTTCAAACTGCCCCTTGTGGGTTCGTCGTCACGGATAACATCGAGCCTGACCATCCTATCATCTACGTCAATACCGTCTTCGAGATGGTTAC TGGTTATCGAGCTGAGGAAGTCCTTGGCCGCAACTGCCGCTTTTTGCAATGTAGAGGACCTTTTGCCAAAAGAAGGCACCCATTAGTTGACTCAGCGGTG ATTTCAGAAATAAGGAGATGCCTTGATGAAGGAATCGAATTCCAAGGTGAGCTGTTGAATTTCAGAAAAGATGGATCACCATTAATGAACAGGCTGAGAC TCACTCCCATATATGGCGAGGATGAGATAATTACCCACGTTATTGGTATTCAGTTTTACACTGAAGCAGCTATTGATCTTGGCCCTGTACCTGGTTCATC AATAAAGGACTCTGCAAAATTAACTGACCGTTTGGGCTCTTGTCTTTCCACGTACCGCCCTACCTTGGCTGGCGATCGATCTGTTTGTCGTAGTGGGCTT TGTGGCATGCTGGTCTTGAGTGACGAGGTGATATCTCAGAGGATACTGTCACTCTTAACTCCAAGAGATATTGCATCTGTTGGTTCAGTCTGTCGGCAAT TATATGAGCTTACGAAAAATGAAGACCTCTGGAGAATGGTCTGCCAAAATGCTTGGGGATGTGAAACAACTCGTGTTCTAGAGACCGTACCAGGTGCCAA GCGATTGGGATGGGGACGTCTTGCTCGTGAATTAACGACTCTCGAAGCAGCAGCATGGAGAAAGCTTACTGTTGGCGGTGGTGTTGAACCTTCACGCTGC AACTTTAGTGCTTGTGCAGTAGGGAATCGGGTTGTTCTGTTTGGAGGGGAAGGCGTTAATATGCAACCAATGAACGACACATTTGTATTAGATCTGAACG CCAGCATTCCAGAGTGGGAGCATGTCCAAGTGAGCTCTCCTCCTCCTGGGCGGTGGGGTCACACAATATCTTGTGTTAATGGCTCTAATTTGGTAGTTTT TGGAGGCTGTGGAAGGCAAGGATTACTGAATGATGTTTTCTTACTAGATTTGGATGCTAAGCCTCCAACTTGGCGAGAGATATCTGGATTGGCACCTCCA CTTCCTAGATCATGGCATAGCTCATGCACTCTAGATGGTACCAAGTTGATTGTTTCCGGTGGGTGTGCCGATTCTGGAGTTCTTCTTAGTGACACATTTC TGCTAGATCTGTCAATGGAGAAACCAACTTGGAGAGAGATACCAGCTGCGTGGACTCCGCCTTCTCGGCTGGGCCACACACTTTCAGTTTACGGTGGCCG GAAAATATTGATGTTTGGGGGTCTGGCTAAGAGCGGCCCCCTTAGGTTCCGTTCCAGCGATGTCTTCACCATGGATTTAAGCGAGGAAGAACCATGTTGG AGATGTGTGACAGGGAGTGGAATGCCAGGAGCTGGAAATCCAGGGGGAGTAGCACCTCCCCCTAGACTTGATCATGTAGCTGTGAGCCTTCCAGGTGGTA GAATCGTGATTTTTGGAGGTTCAGTTGCTGGACTTCATTCCGCGTCCCAACTTTACCTATTAGATCCAACAGAGGAGAAACCAACATGGAGAATTCTAAA TGTACCGGGACGACCTCCTAGATTTGCATGGGGACACAGTACCTGTGTGGTTGGAGGGACAAGAGCCATCGTTCTTGGTGGACAAACTGGTGAGGAATGG ATGCTAAGCGAGCTGCACGAGCTGTCCCTTGCTAGTTCACTGATATGA
AA sequence Show only first row Show all	>Lus10015531 pacid=23173605 polypeptide=Lus10015531 locus=Lus10015531.g ID=Lus10015531.BGIv1.0 annot-version=v1.0 MEWDSSNSDLSGDDDEEESFDFGQSGAPISSPVEILLQTAPCGFVVTDNIEPDHPIIYVNTVFEMVTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSAV ISEIRRCLDEGIEFQGELLNFRKDGSPLMNRLRLTPIYGEDEIITHVIGIQFYTEAAIDLGPVPGSSIKDSAKLTDRLGSCLSTYRPTLAGDRSVCRSGL CGMLVLSDEVISQRILSLLTPRDIASVGSVCRQLYELTKNEDLWRMVCQNAWGCETTRVLETVPGAKRLGWGRLARELTTLEAAAWRKLTVGGGVEPSRC NFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNASIPEWEHVQVSSPPPGRWGHTISCVNGSNLVVFGGCGRQGLLNDVFLLDLDAKPPTWREISGLAPP LPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPTWREIPAAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCW RCVTGSGMPGAGNPGGVAPPPRLDHVAVSLPGGRIVIFGGSVAGLHSASQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEW MLSELHELSLASSLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10015531 [exp]	0	1
AT5G21040		FBX2	F-box protein 2 (.1.2)		Lus10008402 [exp]	1.0	0.9161
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10020003 [exp]	1.4	0.9094
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Lus10017653 [exp]	2.8	0.8907
AT3G58050			unknown protein		Lus10016244 [exp]	4.2	0.8960
AT3G05675			BTB/POZ domain-containing prot...		Lus10033220 [exp]	4.9	0.8859
AT3G14940		ATPPC3	phosphoenolpyruvate carboxylas...		Lus10000065 [exp]	5.9	0.8789
AT2G35660		CTF2B, CTF2A	FAD/NAD(P)-binding oxidoreduct...		Lus10011001 [exp]	7.7	0.8897
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10015530 [exp]	11.7	0.8788
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10007931 [exp]	12.0	0.8550
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10013467 [exp]	12.4	0.8413

Compare expression of checked genes

Lus10015531 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.