Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23600 241 / 1e-79 ATMES2, ACL, ATME8 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) AT2G23620 238 / 2e-78 ATMES1 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) AT2G23610 235 / 2e-77 ATMES3 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) AT3G50440 232 / 1e-75 ATMES10 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) AT2G23580 224 / 5e-73 ATMES4, ABE4 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) AT2G23560 223 / 1e-72 ATMES7 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) AT4G37150 217 / 2e-70 ATMES9 ARABIDOPSIS THALIANA METHYL ESTERASE 9, methyl esterase 9 (.1) AT2G23590 207 / 2e-66 ATMES8 methyl esterase 8 (.1) AT2G23550 206 / 9e-66 ATMES6, ABE1 ALPHA/BETA FOLD HYDROLASE/ESTERASE 1, methyl esterase 6 (.1.2) AT5G10300 187 / 2e-58 AtHNL, HNL, ATMES5 HYDROXYNITRILE LYASE, ARABIDOPSIS THALIANA METHYL ESTERASE 5, methyl esterase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022467 [exp] 379 / 7e-134 AT3G50440 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10020004 [exp] 260 / 5e-89 AT2G23570 115 / 1e-32 ARABIDOPSIS THALIANA METHYL ESTERASE 19, methyl esterase 19 (.1) Lus10005400 [exp] 261 / 1e-87 AT2G23610 206 / 8e-66 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Lus10009203 [exp] 259 / 7e-86 AT2G23620 205 / 6e-65 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Lus10005402 [exp] 254 / 2e-84 AT2G23580 204 / 3e-65 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) Lus10023326 [exp] 239 / 6e-79 AT3G50440 263 / 3e-88 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10009205 [exp] 232 / 3e-76 AT2G23580 194 / 3e-61 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) Lus10005401 [exp] 220 / 4e-70 AT2G23600 184 / 5e-56 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10038592 [exp] 216 / 1e-69 AT2G23620 306 / 4e-105 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G036700 [exp] 309 / 1e-106 AT2G23610 244 / 8e-81 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Potri.007G036800 [exp] 289 / 1e-97 AT2G23560 230 / 2e-74 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) Potri.009G107200 [exp] 279 / 3e-94 AT3G50440 244 / 4e-80 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.009G107500 [exp] 273 / 6e-92 AT3G50440 240 / 1e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.007G037700 [exp] 234 / 1e-76 AT2G23620 300 / 6e-103 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133700 [exp] 232 / 4e-76 AT2G23620 277 / 6e-94 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037300 [exp] 231 / 2e-75 AT2G23620 289 / 2e-98 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133600 [exp] 230 / 3e-75 AT2G23620 274 / 8e-93 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133800 [exp] 226 / 5e-74 AT2G23620 270 / 7e-91 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133900 [exp] 213 / 9e-69 AT2G23620 251 / 3e-84 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10015532 pacid=23173674 polypeptide=Lus10015532 locus=Lus10015532.g ID=Lus10015532.BGIv1.0 annot-version=v1.0 ATGGAGGAGGAGGAGGAGAAGCAGAGACGCTACGTGTTGGTCCATGGAGCTTGCCATGGAGCATGGTGTTGGTACAAGGTTGTTCCTCTGCTACAACAAG CTGGCCACAAAGTTACAGCAATTGACTTGGCTGCCTCTGGGATCCAATGGAAGCAGGTTAGTGATGTAGGTTCAATGACAGAGTACCATGAGCCACTGAT GGAGTTGATGGATTCAGTAAAGGAGGATAAGGTTATTTTAGTTGGGCACAGTATGGGTGGACTTGGAATATCTGCTGCCATGGAAAGATACCCAGAGAAA GTCTGTGTTGCTGTCTTTGTATCAGCTACTATGCCATCTCCTCGTCCTGGTTTACCTTACTCTGCCTTGATACAAGAGGTATTCAAGGGAATGGACTACA TGGATGACGAGTTTTCATATGATGATGGCCCTGACAACCCTCCCACTACAGTATTGCTTGGTCGCAAAGCCATGTCAACTAAACTCTACCAGCTCTCCCC AGCTGAGGATCTGACACTGGGAATGCTGCTAATAAGACCAATTCGGCTATTCAAAGATAGTGAAGTGGATGCTGAAACAGTGCTGACAAAAGACAGATAT GGATCAGTTCCTCGAGTTTATGTTGTATGTGAAGAAGATGAGAGTCTAAAGCCCGACAAGCAGAGGTGGATGATTGAGAACAACCCAACTGACCAAGTCA AACCCATCTCTGGTGCTGATCATATGGTCATGTTCTCTAAACCGCATCAACTGTGCTCTTATCTCCTGGAAATTGCCACCAACTATTCCTGA
AA sequence Show only first row Show all	>Lus10015532 pacid=23173674 polypeptide=Lus10015532 locus=Lus10015532.g ID=Lus10015532.BGIv1.0 annot-version=v1.0 MEEEEEKQRRYVLVHGACHGAWCWYKVVPLLQQAGHKVTAIDLAASGIQWKQVSDVGSMTEYHEPLMELMDSVKEDKVILVGHSMGGLGISAAMERYPEK VCVAVFVSATMPSPRPGLPYSALIQEVFKGMDYMDDEFSYDDGPDNPPTTVLLGRKAMSTKLYQLSPAEDLTLGMLLIRPIRLFKDSEVDAETVLTKDRY GSVPRVYVVCEEDESLKPDKQRWMIENNPTDQVKPISGADHMVMFSKPHQLCSYLLEIATNYS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23600		ATMES2, ACL, AT...	ARABIDOPSIS THALIANA METHYL ES...		Lus10015532 [exp]	0	1
AT2G21710		EMB2219	embryo defective 2219, Mitocho...		Lus10042322 [exp]	7.1	0.7959
AT1G62750		ATSCO1, ATSCO1/...	SNOWY COTYLEDON 1, Translation...		Lus10004326 [exp]	13.0	0.7901
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Lus10033247 [exp]	13.3	0.7574
AT5G14970			unknown protein		Lus10014506 [exp]	13.5	0.7274
AT5G24690			Protein of unknown function (D...		Lus10001610 [exp]	15.1	0.7179
AT4G30825			Tetratricopeptide repeat (TPR)...		Lus10035818 [exp]	22.4	0.7759
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Lus10009710 [exp]	24.1	0.7664
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015113 [exp]	26.2	0.7683
					Lus10039994 [exp]	29.8	0.7257
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Lus10040657 [exp]	31.1	0.7522

Compare expression of checked genes

Lus10015532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.