Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020005 [exp] 59 / 3e-11 AT5G57280 327 / 2e-113 root initiation defective 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028960 [exp] 45 / 2e-06 AT5G57280 444 / 4e-159 root initiation defective 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10007484 [exp] 45 / 3e-06 AT5G57280 436 / 9e-156 root initiation defective 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015533 pacid=23173654 polypeptide=Lus10015533 locus=Lus10015533.g ID=Lus10015533.BGIv1.0 annot-version=v1.0 ATGGGTTTGTATCGTCATCTCACCGAGGTTCGAGCAAATCCGATAGAATACAAAGGCTTGCCATTTAGGCCTGGAACTATTGATGGTGCCATTAGTATCT CTGCTGTTCAGTACCAAGAGCAGAAAGGAGTACTTGGTTCTCACTTGCGGACCAGCATCAATCGATACAGCTGTCCCAGACCAAAAGGTCTAGACGGCGA CGAAAGCTGCTCTGAGGATGAAAGCGGTGATTACTATGATGAAGAAAAGCAAACAGTTAGCATGTCAGATAGACACAGACCAAAGGAAAGGCAAAAACAG GGAAGAAAGGGAAAGGGAAGCAATGATATTGAAGAAGGAGCAGATGAGGGGTAA
AA sequence Show only first row Show all	>Lus10015533 pacid=23173654 polypeptide=Lus10015533 locus=Lus10015533.g ID=Lus10015533.BGIv1.0 annot-version=v1.0 MGLYRHLTEVRANPIEYKGLPFRPGTIDGAISISAVQYQEQKGVLGSHLRTSINRYSCPRPKGLDGDESCSEDESGDYYDEEKQTVSMSDRHRPKERQKQ GRKGKGSNDIEEGADEG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57280		RID2	root initiation defective 2, S...		Lus10015533 [exp]	0	1
AT4G04750			Major facilitator superfamily ...		Lus10018957 [exp]	1.0	0.9217
AT5G03455		ACR2, ARATH;CDC...	ARSENATE REDUCTASE 2, Rhodanes...		Lus10014420 [exp]	1.4	0.9104
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Lus10021554 [exp]	3.5	0.8674
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029184 [exp]	3.5	0.8844
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10006183 [exp]	7.3	0.8049
AT5G51490			Plant invertase/pectin methyle...		Lus10027203 [exp]	7.7	0.8120
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10021992 [exp]	7.9	0.8454
					Lus10039365 [exp]	8.8	0.7939
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10026617 [exp]	10.1	0.8183
					Lus10006216 [exp]	12.2	0.8375

Compare expression of checked genes

Lus10015533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.