Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19090 423 / 3e-138 Protein of unknown function (DUF630 and DUF632) (.1) AT4G30130 404 / 9e-132 Protein of unknown function (DUF630 and DUF632) (.1) AT4G35240 159 / 2e-40 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT1G77500 154 / 4e-39 Protein of unknown function (DUF630 and DUF632) (.1) AT1G21740 152 / 2e-38 Protein of unknown function (DUF630 and DUF632) (.1) AT2G17110 139 / 3e-34 Protein of unknown function (DUF630 and DUF632) (.1) AT2G27090 138 / 5e-34 Protein of unknown function (DUF630 and DUF632) (.1) AT4G39790 135 / 3e-33 Protein of unknown function (DUF630 and DUF632) (.1) AT3G51290 120 / 4e-28 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT1G20530 116 / 4e-27 Protein of unknown function (DUF630 and DUF632) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020009 [exp] 607 / 0 AT2G19090 381 / 1e-125 Protein of unknown function (DUF630 and DUF632) (.1) Lus10020008 [exp] 322 / 3e-105 AT2G19090 214 / 6e-63 Protein of unknown function (DUF630 and DUF632) (.1) Lus10024039 [exp] 150 / 5e-38 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10041710 [exp] 150 / 5e-38 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10025077 [exp] 150 / 1e-37 AT4G35240 237 / 3e-66 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10024007 [exp] 144 / 6e-36 AT1G21740 238 / 1e-66 Protein of unknown function (DUF630 and DUF632) (.1) Lus10014445 [exp] 143 / 2e-35 AT4G35240 712 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10023949 [exp] 140 / 7e-35 AT4G35240 655 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10042722 [exp] 135 / 5e-33 AT1G21740 659 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G077000 [exp] 569 / 0 AT2G19090 664 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G249400 [exp] 179 / 5e-48 AT1G20530 359 / 9e-116 Protein of unknown function (DUF630 and DUF632) (.1) Potri.004G177200 [exp] 172 / 3e-45 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G137500 [exp] 169 / 2e-44 AT3G51290 228 / 4e-64 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.002G082000 [exp] 157 / 4e-40 AT1G21740 644 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.007G090300 [exp] 155 / 1e-39 AT4G39790 556 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G077700 [exp] 152 / 1e-38 AT4G39790 546 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G179100 [exp] 151 / 4e-38 AT1G21740 617 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G142900 [exp] 144 / 1e-35 AT4G35240 621 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.004G182900 [exp] 143 / 2e-35 AT4G35240 639 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [flax] [poplar] DUF632 Protein of unknown function (DUF632) PF04783 [flax] [poplar] DUF630 Protein of unknown function (DUF630)
Representative CDS sequence Show only first row Show all	>Lus10015534 pacid=23173653 polypeptide=Lus10015534 locus=Lus10015534.g ID=Lus10015534.BGIv1.0 annot-version=v1.0 ATGGGATGTTCTACATCTAAGTTGGATGATGAAGAAGCAGTTAAGCTTTGTAAGGACAGGAAACGGTTCATTAAGCAGGCTGTAGACCTACGAACACGGT TTGCTTCTGGCCACTTGGCTTATGTTCAGTCCTTGAAAAGGGTTTCTTCTGCTCTCCGAGAATATATCGAATGGGGCGAGCCTCAGGATTTGTTTCTGGA TTCCTTCATGACTCCAAATTTCACTCCCGTAAAGAAAGGCAGCCCACAGTTGATCTCGAGTTCGCATAAATCCTTCACACCAGCACTTCCTCACTCGAGA ACTAAGTCGACTGTCAGGGTAAATTACCTGAAATCAGGTGGGGACCAAACAGTTTTGGTCGAAGAGAGACCTCAGTCGCCAGAGACATACCATCTCGAAG CTTATCCGCCAATGCAGTATTACGGTTCTGATAGCTTCTTTGGAGCACAACAGCCTTCTCAGACGAGCTCTTCCTTCTTTTCGTACTCCCCGAACGATAG GCCTTACATTCCTTCTCTTTCCATAACTTCGCAAAACAATTACTCGAGAAAAATGATGAGTCGTAACTTTAGAAAAGATGATCATAATAAAACTACGGTA GTAGGTGGTAGTAAAGCACTCGAGGCGGGAAAGCCAGGTTTTACTGTCTATGTTAATCGACGACCAACAAGCATGGCAGAAGTTGTCAAGGATCTTGAAG ACCAGTTTACAAGAATCTGTGATTCAGCCAAGGAGGTCTCAACTTTGTTAGAGTCTAGCAAGGCTCAGTATTCATCCACCTCAAATGACCTCGCAGCATT GAAAATGTTGAATCCAGTAGCTATAATCCGTTCAGCTTCGTTTCGTTCATCCTCATCAAGATTTGTGGGCAATTTTACGAGAGACGAGGGTGATGAAAGC TGCAGTGACTTATCAGAGGAATCGTCCGTGATCTCTGGTGGTCACCAGTCAACATTAGATAGATTATATGCATGGGAGAAGAAGCTGTTTGAGGAAGTGA AGTCAGGTGAGAAGGTTCGAATAGCATACGAAAAGAAATGCATGCAGCTTAGGAACCAAGATGTGAAGGGAGAGGATCCCACTGTGTTTGACAAAACAAG GACAGCTATTAGAGATCTGCATACTCAAATGAAGGTTTCAATACACTCTGTTGAAGTCATTTCTAATAGAATACAGACACTAAGGGATGAGGAATTACAG CCTCAACTTTTAGAACTAGTACAAGGGTTAGCAACAATGTGGAAGATAATGGCAGAGTGCCATCAGTTGCAGAAGCAAACACTGGACAAAGCCAAGGTAT TACTGGCAGGAACACCTTCAAAGCTAGAAGCAAGAAGGAGAGCTTCCATGTCCATGACCGACCCTCAACGTCTAGCAAGATCAGCTGCCAATTTGGAGTC GGAACTAAGGAACTGGAGAGTATGCTTCGAAACATGGATCGCTTCTCAACGATCCTACATTCAGGCACTAACAGGTTGGCTCCTGAGGTGTGCAAGGTTG GACCCTGAGATATCAAAACTGCCCTTCTCTCCTCCGCGTCGGTCGAGCACCACCTTCCCGCTGTTTGGTCTGTGCATTCAATGGTCAAGGTTTTTGGATG AGATTCAAGAGAAGCCAGTTCTGGACGGGTTGGAGACTGCAGCGGATTGGATGGGGTCGATCCATACGCAGCAGTTGAGAGATGATGGTCCTACTTCTGT AGGAGGATCAAGGAGATATAGCGGGGGTGGAGAAATGGACATAGTAGAAGTTGGTAAGGTGGAAGAGGCGATGACTGTGGAGAAAATGGCTGAAATTGCA ATGAGAGTACTGTGTGCTGGAATGTCAGTTACAATAAGCTCATTAACTGAGTTTGGGATTGGTGCAGCTGAAGGATATGAGCAGATTTTCAAGAAATGGG AGCCCACCAAAGCCCCACAGCCGCCGGTGGTTGCTGCCGCCGATTAG
AA sequence Show only first row Show all	>Lus10015534 pacid=23173653 polypeptide=Lus10015534 locus=Lus10015534.g ID=Lus10015534.BGIv1.0 annot-version=v1.0 MGCSTSKLDDEEAVKLCKDRKRFIKQAVDLRTRFASGHLAYVQSLKRVSSALREYIEWGEPQDLFLDSFMTPNFTPVKKGSPQLISSSHKSFTPALPHSR TKSTVRVNYLKSGGDQTVLVEERPQSPETYHLEAYPPMQYYGSDSFFGAQQPSQTSSSFFSYSPNDRPYIPSLSITSQNNYSRKMMSRNFRKDDHNKTTV VGGSKALEAGKPGFTVYVNRRPTSMAEVVKDLEDQFTRICDSAKEVSTLLESSKAQYSSTSNDLAALKMLNPVAIIRSASFRSSSSRFVGNFTRDEGDES CSDLSEESSVISGGHQSTLDRLYAWEKKLFEEVKSGEKVRIAYEKKCMQLRNQDVKGEDPTVFDKTRTAIRDLHTQMKVSIHSVEVISNRIQTLRDEELQ PQLLELVQGLATMWKIMAECHQLQKQTLDKAKVLLAGTPSKLEARRRASMSMTDPQRLARSAANLESELRNWRVCFETWIASQRSYIQALTGWLLRCARL DPEISKLPFSPPRRSSTTFPLFGLCIQWSRFLDEIQEKPVLDGLETAADWMGSIHTQQLRDDGPTSVGGSRRYSGGGEMDIVEVGKVEEAMTVEKMAEIA MRVLCAGMSVTISSLTEFGIGAAEGYEQIFKKWEPTKAPQPPVVAAAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19090			Protein of unknown function (D...		Lus10015534 [exp]	0	1
AT2G19090			Protein of unknown function (D...		Lus10020009 [exp]	1.0	0.9366
AT1G62050			Ankyrin repeat family protein ...		Lus10003524 [exp]	2.8	0.8964
AT3G15680			Ran BP2/NZF zinc finger-like s...		Lus10002032 [exp]	4.2	0.8939
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10019694 [exp]	4.9	0.8564
AT2G01913			unknown protein		Lus10031943 [exp]	5.5	0.8455
AT5G21090			Leucine-rich repeat (LRR) fami...		Lus10002579 [exp]	6.9	0.8198
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10005559 [exp]	7.7	0.8523
AT1G62050			Ankyrin repeat family protein ...		Lus10002942 [exp]	15.4	0.8365
AT5G58300			Leucine-rich repeat protein ki...		Lus10034258 [exp]	17.0	0.8313
AT3G27390			unknown protein		Lus10022317 [exp]	17.0	0.8086

Compare expression of checked genes

Lus10015534 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.