Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19080 295 / 2e-99 metaxin-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020010 [exp] 487 / 1e-169 AT2G19080 308 / 1e-99 metaxin-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G145508 [exp] 339 / 5e-117 AT2G19080 322 / 2e-110 metaxin-related (.1) Potri.006G077100 [exp] 338 / 5e-116 AT2G19080 332 / 7e-114 metaxin-related (.1) Potri.018G147625 [exp] 219 / 3e-70 AT2G19080 196 / 2e-61 metaxin-related (.1) Potri.001G065336 [exp] 146 / 1e-43 AT2G19080 149 / 3e-45 metaxin-related (.1) Potri.001G064609 [exp] 108 / 2e-29 AT2G19080 101 / 4e-27 metaxin-related (.1) Potri.018G145080 [exp] 100 / 3e-25 AT2G19080 102 / 2e-26 metaxin-related (.1) Potri.001G065000 [exp] 51 / 5e-08 AT2G19080 48 / 2e-07 metaxin-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015535 pacid=23173641 polypeptide=Lus10015535 locus=Lus10015535.g ID=Lus10015535.BGIv1.0 annot-version=v1.0 ATGGAAGAATCGCGCGACGGAGACTGGACACTCGTTACCAGAAAACCCTATTTCGGCCTCCCTACTGCTTGCCCAGCTTGTTTGCCCCTTTACATCTACC TCAAATTCGCTCGCTTCCCTTTCAATTTGGAGTTCAATTCCGCTTACCCGGACTCAGATCAAATTCCTTACGTTGAGGCAGGAACTTACGTGGCCTATAA CAATGAAAAAGGTGGGGTTATACAATGTATGAAACAGGATCGCATTGTTGACTTAGATGCTGAATTTAGCTCCGACCCAGAATGGGTATCCATGAAAGCA ATGATCAGCTCCTGGCTTGCTGATGCAATCACCTACGAGCTCTGGATTGGATCTGGCGATAGTTCTGCCATGAAGATTTATTATTCCGATCTTCCTTGGG TGATAGGAAAGTCTCTGTTTGTTAAGAAAGTGTATGATGTTAAGCAGCAACTTCATATAACTAAACAGAATGTCGAGCAGAGGGAATTAGAGCTTTATGA TAGAGCAAAAACAGCATACAGAGCTTTGTCAACAAAGCTGGGGCCAGATGCTTTTCTCTTCAGGAGCAGGCCGACAAGCTTGGATGCAGACCTTGTTGCA CATGTGCTATTCACAGTTCAAGCGTTACCTGAAGAATCAGTTCTACGCGCAGCTCTCTTGGAGCACGAAAATCTCATAAAATATGCTGAAAAACAAAACA ATGATCTCCTCAAGTCTGGTCCGTCAACTGCTTCTCTTCCACAATTCCCATCCCCGGCGTCATCACGAGCAAGTTCAAGCTCAAAATGGAAGACGAAGCC TAAGAGGGAGGAAACGGAAGAGGAGAAAACTTTCAAAAGGAAGGCGAAATTCTTTCTGGGGGCGCAGCTGGTTGCAGTGCTACTGTTTTTGTCTGTCTTA GGCAGTTCTAGCTCGTCGGAGATGGGCATTGACGAGGATGATGAAGATTATGAGTAA
AA sequence Show only first row Show all	>Lus10015535 pacid=23173641 polypeptide=Lus10015535 locus=Lus10015535.g ID=Lus10015535.BGIv1.0 annot-version=v1.0 MEESRDGDWTLVTRKPYFGLPTACPACLPLYIYLKFARFPFNLEFNSAYPDSDQIPYVEAGTYVAYNNEKGGVIQCMKQDRIVDLDAEFSSDPEWVSMKA MISSWLADAITYELWIGSGDSSAMKIYYSDLPWVIGKSLFVKKVYDVKQQLHITKQNVEQRELELYDRAKTAYRALSTKLGPDAFLFRSRPTSLDADLVA HVLFTVQALPEESVLRAALLEHENLIKYAEKQNNDLLKSGPSTASLPQFPSPASSRASSSSKWKTKPKREETEEEKTFKRKAKFFLGAQLVAVLLFLSVL GSSSSSEMGIDEDDEDYE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19080			metaxin-related (.1)		Lus10015535 [exp]	0	1
AT2G19080			metaxin-related (.1)		Lus10020010 [exp]	1.0	0.8364
AT3G27430		PBB1	N-terminal nucleophile aminohy...		Lus10032102 [exp]	2.4	0.8290
AT1G03150			Acyl-CoA N-acyltransferases (N...		Lus10022048 [exp]	5.9	0.7975
AT2G05840		PAA2	20S proteasome subunit PAA2 (....		Lus10027669 [exp]	7.0	0.7932
AT3G60360		EDA14, UTP11	U3 SMALL NUCLEOLAR RNA-ASSOCIA...		Lus10029059 [exp]	7.7	0.8062
AT1G03150			Acyl-CoA N-acyltransferases (N...		Lus10042595 [exp]	10.6	0.7908
AT1G04190		TPR3	tetratricopeptide repeat 3, Te...		Lus10041189 [exp]	13.4	0.7872
AT1G04190		TPR3	tetratricopeptide repeat 3, Te...		Lus10021905 [exp]	13.4	0.7852
AT2G28740		HIS4	histone H4 (.1)		Lus10005448 [exp]	14.3	0.6968
AT1G51510		Y14	RNA-binding (RRM/RBD/RNP motif...		Lus10003632 [exp]	14.5	0.7736

Compare expression of checked genes

Lus10015535 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.