Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29940 419 / 2e-136 HD PRHA pathogenesis related homeodomain protein A (.1.2) AT3G19510 204 / 5e-56 HD HAT3.1 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) AT3G01460 46 / 0.0001 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1) AT1G77250 45 / 0.0002 RING/FYVE/PHD-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020011 [exp] 922 / 0 AT4G29940 429 / 7e-141 pathogenesis related homeodomain protein A (.1.2) Lus10018741 [exp] 184 / 7e-49 AT3G19510 304 / 4e-92 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Lus10024826 [exp] 145 / 7e-36 AT3G19510 224 / 1e-62 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Lus10030864 [exp] 47 / 9e-05 AT3G01460 511 / 2e-152 methyl-CPG-binding domain 9 (.1) Lus10029733 [exp] 45 / 0.0001 AT1G77250 313 / 5e-100 RING/FYVE/PHD-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G142400 [exp] 578 / 0 AT4G29940 461 / 4e-152 pathogenesis related homeodomain protein A (.1.2) Potri.006G075500 [exp] 561 / 0 AT4G29940 466 / 6e-154 pathogenesis related homeodomain protein A (.1.2) Potri.001G298400 [exp] 192 / 4e-51 AT3G19510 292 / 1e-86 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Potri.009G093000 [exp] 184 / 1e-48 AT3G19510 291 / 3e-86 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Potri.017G072460 [exp] 45 / 0.0002 AT3G01460 929 / 0.0 methyl-CPG-binding domain 9 (.1) Potri.001G083700 [exp] 44 / 0.0002 AT2G46680 132 / 3e-38 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10015536 pacid=23173628 polypeptide=Lus10015536 locus=Lus10015536.g ID=Lus10015536.BGIv1.0 annot-version=v1.0 ATGCATAGTATGGTGAAGACAGTAGTAGACCAAGCATCCAAAAAAGCTACTCTCTCTAAGGCAGAATTCAGCTCTTTGTTAATTGCATCATTGAAGTCAA GACATGGCAGTAAGAAACAAAGATCATTGTCCAGTCCTTCTGTAAAGGCCATACGTTCAGTTATATCAAAGAAGAAAAAAGTTGGTCGCCCTTCAAGTAA GCTGAGCAGGAAAGGTGCTAGGTCTAGAAAGTTGATTCGTGGTAAAAGTACAAACAAACAAGTTCATCAAAGTTCGTCAAAGAAGTCGGATTTATCAGAC CCAAGGTGTCAACCTGCGCCAGCCACCTGTTCTGAGATAAATGATAAGAGCGCGTCGAAGGGTAAGAAAAGAAAATTCAAAAGGAGAACATTAACTGAAA AGAGAAAGCACAAGGAAGAGCTAGATGAACCATCAAAGTTGCAGAGGAGAACAAGGTATTTGATGATTAGAATGAAGATGGAGCAGAACCTTATAGATGC TTACTCTGGTGAAGGATGGAAAGGCCACAGTCGAGAGAAAATCAGGCCAGAGAAAGAACTCATAAGAGCAAAAAAGCAGATTTTGAAGTGTAAGCTTGGA ATACGGGATGCAGTCCACCAACTTGATCTGCTTAGTAACGTTGGATGCATTGAAGAGTCGGTTATAGCGGCAGATGGATCAGTATCCCATGAACATATCT TCTGTGCAAAGTGCAAATCAAATGACGTAGTCCGAGATAATGACATCATACTTTGTGACGGGACATGCAATTGTGCCTACCATCAGATGTGCCTTGAACC ACCACTCCACACTGAAAATATACCCCCTGGAGACCAAGGATGGTTTTGCAAGTTTTGCGAACGTCGAATGGAAATTATAGATTCCATGAATGCACATCTT GGAACCCGATTCTCCATGACTTGCAACTGGAAGGTTGATATATTCACCGAAGAGGCCGATACTCCTGATGGTGGGAACATTTTAACTCTTGAAGAAGAAT GGCCATCAGACGATTCTGAAGACGATGACTATGATCCAGAAAGGAGGGAGAAGAGCATGAGTGGAGCAGGAACTGACAATCATGTGTCAGATTCTGCTAG CAGTTCCACTAGCTTAGGTTGGTCTTCACATGATGAAGCTCTTCCTGAATCCAAAAGGTTACAATTGGAAGGCATGGTCGTCAGAAGCCACTCGATTAAT AGTAGCTTAAATTCCGAGGAAGCCAGTGATGTTGAAATAGTTCATGGGCGCAGGCGGAGAAGAGCAGTTGACTATAGGAAGTTGTATGATGAGATGTTTG GAAAGGATGCTCCTGTAGCTGACCAGCTCAGTGAAGATGAAGACTGGGGTCCAAGCAAGAGGACAAGGAGGGCAAAGGAATCAGATGCTGCTAGTACCCT TATGAATCTCTACCAAAATGAGAAAATCGGTGAGGAGATTGAGGAAGGTAAGAAGGAGGTTCCTCAAGATTCTCTGGTTAGAAGGGCACTCTCCAGAATT CCTCCCAGTGCAGTTGAGAAACTCCGCCAAGCTTTTGAGGGAAATGAACTCCCTTCTAGAAAAGTTAAGCAGAAGCTTTCGGAGGAAATGGGTCTTGAGC CTGGAAAGGTCAGCAAATGGTTTAAGAACGCTAGGTACATGGCATTGAAATCCAGAAAGGTGAACAAAACAACTGGGTCCAGTGATTCTACCCCTATGCT TTCTGAAGCCGCAGACGATGTAAAGAAGGGAGGGGGCGAGGGTCCTGAAGTTGTAAATGATATTGGAACTGAACCCAGATTGCGTACCAGAAGAACTTCG AAACATGTCTCCACAATGACGAAACTAAAGTCCAAATACGGGGTAAAGGAAAATGATCCAGCAAAATCACAGATGGAAGCTGAGAAGTTGGATGATGATG TTAGCTTGAAGATGCTGCTGAAAGATGAATCAAAGAGAGAGAAGAGCGATTCGTCGGAGTCTGCACATCAGTTGGCTGAGACTGAGATGGAGAGACTTTG TAGAGCCAAAGACACCATAGACAAGATGAAACAGATTCTGGGAAGCCTACCATTCCTCAAACGTAGAAAGTCAAAGCCACCCCTTGGTCTTCTGGAAAGG GTGGTTTATGTTCCTATCGCACAGCTTAAGGAGAAGATATGA
AA sequence Show only first row Show all	>Lus10015536 pacid=23173628 polypeptide=Lus10015536 locus=Lus10015536.g ID=Lus10015536.BGIv1.0 annot-version=v1.0 MHSMVKTVVDQASKKATLSKAEFSSLLIASLKSRHGSKKQRSLSSPSVKAIRSVISKKKKVGRPSSKLSRKGARSRKLIRGKSTNKQVHQSSSKKSDLSD PRCQPAPATCSEINDKSASKGKKRKFKRRTLTEKRKHKEELDEPSKLQRRTRYLMIRMKMEQNLIDAYSGEGWKGHSREKIRPEKELIRAKKQILKCKLG IRDAVHQLDLLSNVGCIEESVIAADGSVSHEHIFCAKCKSNDVVRDNDIILCDGTCNCAYHQMCLEPPLHTENIPPGDQGWFCKFCERRMEIIDSMNAHL GTRFSMTCNWKVDIFTEEADTPDGGNILTLEEEWPSDDSEDDDYDPERREKSMSGAGTDNHVSDSASSSTSLGWSSHDEALPESKRLQLEGMVVRSHSIN SSLNSEEASDVEIVHGRRRRRAVDYRKLYDEMFGKDAPVADQLSEDEDWGPSKRTRRAKESDAASTLMNLYQNEKIGEEIEEGKKEVPQDSLVRRALSRI PPSAVEKLRQAFEGNELPSRKVKQKLSEEMGLEPGKVSKWFKNARYMALKSRKVNKTTGSSDSTPMLSEAADDVKKGGGEGPEVVNDIGTEPRLRTRRTS KHVSTMTKLKSKYGVKENDPAKSQMEAEKLDDDVSLKMLLKDESKREKSDSSESAHQLAETEMERLCRAKDTIDKMKQILGSLPFLKRRKSKPPLGLLER VVYVPIAQLKEKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29940	HD	PRHA	pathogenesis related homeodoma...		Lus10015536 [exp]	0	1
AT5G38600			Proline-rich spliceosome-assoc...		Lus10003067 [exp]	1.4	0.7490
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Lus10003676 [exp]	2.8	0.7652
AT3G61960			Protein kinase superfamily pro...		Lus10030182 [exp]	3.0	0.7323
AT1G77800			PHD finger family protein (.1....		Lus10024778 [exp]	14.7	0.7251
AT1G15240			Phox-associated domain;Phox-li...		Lus10035877 [exp]	16.1	0.7243
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10000551 [exp]	21.0	0.6499
AT5G67620			unknown protein		Lus10011549 [exp]	22.2	0.7055
AT5G24500			unknown protein		Lus10015567 [exp]	30.8	0.6255
AT3G03300		ATDCL2, DCL2	dicer-like 2 (.1.2.3)		Lus10036447 [exp]	31.1	0.7044
AT1G27170			transmembrane receptors;ATP bi...		Lus10004911 [exp]	31.6	0.7106

Compare expression of checked genes

Lus10015536 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.