Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19260 84 / 2e-17 RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G14700 55 / 8e-08 ORC1, ATORC1A, ORC1A origin recognition complex 1 (.1) AT4G12620 54 / 1e-07 ORC1B, ATORC1B, UNE13 UNFERTILIZED EMBRYO SAC 13, origin of replication complex 1B (.1) AT1G79350 49 / 4e-06 EMB1135 embryo defective 1135, RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G36720 49 / 5e-06 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT3G01460 49 / 8e-06 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1) AT5G24330 47 / 2e-05 SDG34, ATXR6 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) AT3G20280 47 / 3e-05 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G09790 46 / 3e-05 PDE336, SDG15, ATXR5 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) AT1G77250 45 / 5e-05 RING/FYVE/PHD-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020012 [exp] 579 / 0 AT5G57180 211 / 2e-60 chloroplast import apparatus 2 (.1.2.3) Lus10020162 [exp] 79 / 8e-16 AT2G19260 156 / 1e-41 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10036223 [exp] 51 / 2e-06 AT5G44800 1780 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Lus10031846 [exp] 49 / 5e-06 AT4G14700 943 / 0.0 origin recognition complex 1 (.1) Lus10031848 [exp] 49 / 5e-06 AT4G14700 942 / 0.0 origin recognition complex 1 (.1) Lus10031279 [exp] 49 / 7e-06 AT4G14700 1015 / 0.0 origin recognition complex 1 (.1) Lus10008495 [exp] 46 / 5e-05 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10038363 [exp] 46 / 7e-05 AT5G44800 1916 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Lus10029733 [exp] 44 / 0.0002 AT1G77250 313 / 5e-100 RING/FYVE/PHD-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G075400 [exp] 162 / 1e-43 AT2G19260 202 / 3e-55 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.018G142300 [exp] 154 / 7e-41 AT2G19260 205 / 5e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G277400 [exp] 92 / 4e-20 AT2G19260 169 / 4e-46 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.012G018300 [exp] 51 / 6e-07 AT5G24330 480 / 3e-171 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.015G009632 [exp] 50 / 2e-06 AT5G24330 483 / 1e-172 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.017G072580 [exp] 50 / 2e-06 AT3G01460 705 / 0.0 methyl-CPG-binding domain 9 (.1) Potri.009G054300 [exp] 49 / 4e-06 AT4G14700 1015 / 0.0 origin recognition complex 1 (.1) Potri.001G123400 [exp] 47 / 2e-05 AT5G44800 1996 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.002G076900 [exp] 47 / 2e-05 AT1G77250 332 / 3e-107 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.003G110100 [exp] 47 / 2e-05 AT5G44800 1988 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Lus10015537 pacid=23173660 polypeptide=Lus10015537 locus=Lus10015537.g ID=Lus10015537.BGIv1.0 annot-version=v1.0 ATGTCTCGGGACAGGCTACTCCAGAACGTAGAGGATTCAATTCCATCAGCTTTTCTACCAACCCATCAATTATCAACCGTCACCAGTCTCTCTGAGATCA GATCATCTAAGCTGCTTGTGTATAAAAGGAGGAAGCTATCCCAGCCAGACTCCCCCGCTGTTTCCTCAGCAGAAACTAGGTTAAGGGAAAAGAAGGGACC TCTCTCAGTTGCACTTGTTTACAAAAGAAGGAACCTCTCCCAACCAGACTTTGAGTCCCTTGCAGGAACTAGAGAAAGGGAAAACACATCCCTTTCTACT GGCATTTGTTGTCCCAATGCTATTAACCTTCCACGTGTGTACAAAAGAAGAAGAAAGCTCTCTCAGCGAGCTGTCTCTTCTTCTGTTGCACTTGTGTACA AAAGAAGAAGGAAACTACCCCGGCCAGACACGGCTGCTGTCTCCTCAGCAGACACTCTTGCAGCAACTAGGCAAAAGAGACGTTCTTCCCTTTTGATTGG ACTTGTGTACAAAAGAAGAAGGAAGCTTTCCCAGCGGGACTCAGCCACTTTCTCGTTTGTAGAGTCCCTCCGGAGAGCTAGGACTTGTGTACAAAAGAAG AAGGTTGTTTCACACTCGGAAGGTACCAACCACAGTGTGCATGAGAGTTGCTCATCATCTATATCGGATGTAGACTTCATTTCGGCATCCAATAACAAAG AAGTAGATGATACAGGTGAGTGCTCTTCTTCTGCAGTACCTCCTTCAGAGACCTTGGGAGAAGATGCATCAGAGAGGGATATATGCATCTCCATTCTTGT TAGGCATGGAGTTATAAAAAGAGTGTGGCCTTGTAGCAGTCGTACTCCTGGTGTTAGAATTGGCGGCCATGATTGTAAGTTGTGCAACGTTTGTTCTCGT TCGGACTCTACAGGAAGGATGTTGATTTGTGATGATTGTGAGGAGGCGTTTCACTTGTCTTGCTGCAGTCCTCAAATAAAAGCAATCCCTGTTGATGAGT GGCTTTGTCATTGGTGTTTGAGGAAGAACCGTAAGGCTGTCAAGGAAACCAGTGAATGTCATAATATCAGTGATGGAGCAGCTGGGTCCTTCAAAGCTGT TTCTGCTAGTGGTGCACGTCGTATTGAACTGATGCTGACGGACACCAAGCCCTATACTACTGGTGTTCGTGTCGGTAAAGGTTTTCAAGCAGAAGTTCCA GATTGGTCAGGTCCAGCACTTTAG
AA sequence Show only first row Show all	>Lus10015537 pacid=23173660 polypeptide=Lus10015537 locus=Lus10015537.g ID=Lus10015537.BGIv1.0 annot-version=v1.0 MSRDRLLQNVEDSIPSAFLPTHQLSTVTSLSEIRSSKLLVYKRRKLSQPDSPAVSSAETRLREKKGPLSVALVYKRRNLSQPDFESLAGTRERENTSLST GICCPNAINLPRVYKRRRKLSQRAVSSSVALVYKRRRKLPRPDTAAVSSADTLAATRQKRRSSLLIGLVYKRRRKLSQRDSATFSFVESLRRARTCVQKK KVVSHSEGTNHSVHESCSSSISDVDFISASNNKEVDDTGECSSSAVPPSETLGEDASERDICISILVRHGVIKRVWPCSSRTPGVRIGGHDCKLCNVCSR SDSTGRMLICDDCEEAFHLSCCSPQIKAIPVDEWLCHWCLRKNRKAVKETSECHNISDGAAGSFKAVSASGARRIELMLTDTKPYTTGVRVGKGFQAEVP DWSGPAL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19260			RING/FYVE/PHD zinc finger supe...		Lus10015537 [exp]	0	1
AT3G51650			unknown protein		Lus10009100 [exp]	4.0	0.7873
AT1G74900		OTP43	organelle transcript processin...		Lus10042307 [exp]	4.0	0.7822
AT3G27320			alpha/beta-Hydrolases superfam...		Lus10037056 [exp]	4.0	0.7999
					Lus10012006 [exp]	11.0	0.7613
AT4G20740		EMB3131	EMBRYO DEFECTIVE 3131, Pentatr...		Lus10016361 [exp]	13.4	0.7333
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10029784 [exp]	15.1	0.7704
AT5G13970			unknown protein		Lus10035116 [exp]	15.2	0.7663
AT2G01060	GARP		myb-like HTH transcriptional r...		Lus10038734 [exp]	15.5	0.7780
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Lus10018737 [exp]	16.0	0.7869
AT1G02290			unknown protein		Lus10028606 [exp]	16.6	0.7599

Compare expression of checked genes

Lus10015537 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.