Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57180 81 / 2e-16 CIA2 chloroplast import apparatus 2 (.1.2.3) AT4G25990 75 / 1e-14 CIL CCT motif family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020012 [exp] 387 / 2e-127 AT5G57180 211 / 2e-60 chloroplast import apparatus 2 (.1.2.3) Lus10015330 [exp] 132 / 1e-34 AT5G57180 136 / 1e-36 chloroplast import apparatus 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G142100 [exp] 86 / 6e-18 AT5G57180 160 / 5e-44 chloroplast import apparatus 2 (.1.2.3) Potri.006G075200 [exp] 78 / 1e-15 AT5G57180 267 / 5e-85 chloroplast import apparatus 2 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015538 pacid=23173630 polypeptide=Lus10015538 locus=Lus10015538.g ID=Lus10015538.BGIv1.0 annot-version=v1.0 ATGTCATCGTCATCTCCTTATCTGGGCAGGGGAGGAGGCGGAGGGAGAGCTTACGGATTATTAGAGGTGGAAATAGCGGTGAAATCAACCACTTCCTTCT CCTCCACCATAACCAATTCTTCATCCTCTTCCCCCTCTTCCACTCTCTCGGAATCCAGCCCATTGGCAATTTCCACCAGGAAACCACGCTCCTCCAGGCG CCGAAAGCGGCCTAACCAGACATACAATGAAGCCGCCGCACTCCTCTCCACCGCATACCCCAAAATCTTCTCTCTGCCTGCTCCACTACCAAACCACCCT CCCCACTCTCTCCCTTTCGATTCCTCCGATTTGTTGCTTCCCCTCCGCGCCCTCGACTCCGCCACCCGCTTCCTCCCCATTCGAGAACAAGAGCCCAAAT TGGCGGCGGCGGCAGAGGTCAGCTCCCGGTGGCAGCACAGCAGCGCTACCGGGAACTGGAAGGAGAATGGAGAGGAGGAGGAGGAGGATTTCGACGCTGA ATCAATGCTGGACGAGGAATTCGAGCAAGTAGGGATCGATAGCATAATGGGTGGAACTGCAATGATGAATAATAATGAAGCATTGGTCATCAATCACAAT CTTCTCAATCATCATCCTCATCAATATCAGCAAGCGAACTTTGTCTACGGGTACCCGCCGGAATTTCATCATCCGTACTGGTCTGGCGGAGATGTTAATA ATTATAATAATAATAACAGAGCATTTCGGAGATCCTTGGATGATTGGTGGAACTACCCGGTGGTGGACGTGCTCCAAATCTCTCCCAGGCTGCATTCAGT TTCAACCAACCAGATGACAGTGACAAGGAATGTAGACGGCGGCGGTGAAATTGATGAGAAGGCGAAACAGAGCACTACTACTGCTTCAGAGGAGAAAATT GATAAAAGTACTGGAAACAATAAGCAGAAGAAGAAGAAGCTGAAGATGAAGAAAATAGCGAAATTGGGCGGAGAAGAAGTGAAGGAGGCGGAAGAGACAA AAGAAGATTCCAAATTAGGGAGGAATTTGCTGAAACTGAACTACGATGAGGTACTCAAGGAGTGGTCCGGAAAAGGGTCGCCGTTCCCGGAGGACACTGC CGGATGTGGATTTCTAGAAGAAGGCTGCGATGCTTCGGGGCGATTCGTGAGAAGACCAAGTGCTAATAGAAATAGTAGAAGCAGAAGCCACGTCAATCAT AAAGACAATAAATTATAA
AA sequence Show only first row Show all	>Lus10015538 pacid=23173630 polypeptide=Lus10015538 locus=Lus10015538.g ID=Lus10015538.BGIv1.0 annot-version=v1.0 MSSSSPYLGRGGGGGRAYGLLEVEIAVKSTTSFSSTITNSSSSSPSSTLSESSPLAISTRKPRSSRRRKRPNQTYNEAAALLSTAYPKIFSLPAPLPNHP PHSLPFDSSDLLLPLRALDSATRFLPIREQEPKLAAAAEVSSRWQHSSATGNWKENGEEEEEDFDAESMLDEEFEQVGIDSIMGGTAMMNNNEALVINHN LLNHHPHQYQQANFVYGYPPEFHHPYWSGGDVNNYNNNNRAFRRSLDDWWNYPVVDVLQISPRLHSVSTNQMTVTRNVDGGGEIDEKAKQSTTTASEEKI DKSTGNNKQKKKKLKMKKIAKLGGEEVKEAEETKEDSKLGRNLLKLNYDEVLKEWSGKGSPFPEDTAGCGFLEEGCDASGRFVRRPSANRNSRSRSHVNH KDNKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57180		CIA2	chloroplast import apparatus 2...		Lus10015538 [exp]	0	1
AT4G31950		CYP82C3	"cytochrome P450, family 82, s...		Lus10038202 [exp]	1.0	0.9528
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10006894 [exp]	3.0	0.8910
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10039740 [exp]	3.7	0.9007
AT1G44000			unknown protein		Lus10029738 [exp]	7.5	0.8804
AT3G21670			Major facilitator superfamily ...		Lus10030006 [exp]	8.8	0.8705
AT5G04440			Protein of unknown function (D...		Lus10038659 [exp]	9.5	0.8716
AT5G56860	GATA	GATA21, GNC	GATA, nitrate-inducible, carbo...		Lus10040556 [exp]	10.0	0.8268
AT4G02920			unknown protein		Lus10042685 [exp]	11.4	0.8787
AT2G20570	GARP	ATGLK1, GLK1, G...	ARABIDOPSIS GOLDEN2-LIKE 1, GB...		Lus10033642 [exp]	12.2	0.8465
AT2G46735			unknown protein		Lus10030208 [exp]	14.5	0.8609

Compare expression of checked genes

Lus10015538 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.