Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19270 139 / 3e-38 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020014 [exp] 347 / 6e-119 AT2G19270 210 / 3e-65 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G075000 [exp] 172 / 4e-50 AT2G19270 148 / 7e-41 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10253 [flax] [poplar] PRCC Mitotic checkpoint regulator, MAD2B-interacting
Representative CDS sequence Show only first row Show all	>Lus10015539 pacid=23173596 polypeptide=Lus10015539 locus=Lus10015539.g ID=Lus10015539.BGIv1.0 annot-version=v1.0 ATGGATAGTTTGGTAGCTAGCTACGGATCTTCCGACGAAGACGAACCCCATCAGCAGCAACCACATCACCGCCATGAACGATCATTCAGTTCCTCCACCT CTCTACCTCCCGCCCGATCTTCCACAAATCCTCTTTTCTCCGCCCTCCCTCGCCCTAAATCCACCCCCTCATCGTCATCATCTTCGCCATCGCCGTCGTT CTTCTCTTCCTCCCTTCCTCCTCCAAAATCCCAAGCCTCCATCCCTAACCCTAAACGAATCATCCAAATCAAGCCTCCGCCTCTTCCAACCTATCCAGAC GACGACGACGACGAACCAGTACATCCCCGTAAATCTGAAAGATCAACCCCTGTCCACTCTACATCGGTGAAATCCTTCCTGTCTAGTATCCCGGCCCCGA AGAGTTCCTCCGCCTTGGGAGCTCTCCCTTCGTCCTCCAGTTCTGGCCGGAGATCCATCCTCGATACTAGTTCTTCTGCCCCAGTCGACCATGCTAGTCA TCCGGATCCGTCTGCTGTTATTGTTCCTCCGCAGAGTGTAGAAACCGAAGCAGCAGAAGCTACATTTGACTCCGCGTACGCTGATTATTCCAATTATCAG GGTTACGATAGTGGGAGCAGCTATGGCGCAGGGTTGGATCAGACGGTTGACGACGGAGGCTATGCTGCAGCAACAGCAGCAGCATACGGGAACAATTGGG GCGACGAAGCAGCCGTAGGTGCAGGTAGGTCCTCTCGTGGGAAGAGGGGAAGGTACGAGATACCGACTGGGATTGAGATTATTGAAGTTAAGCAGGATGA GCTGACGAAGAACAGGCCTAGAGAGGACCAAGTTAAGTCCACCGGAATCGCTTTCGGCCCTGCATATCAGCCAATTTCTACGGGGAAAGGGAAGCCTACG AAACTTCACAAGAGGAAGCATCAGATTGGTACATTGTACTTTGACATGAAGCAGAAGGAGATGGAATTGCAAGAGCGCCGTGCCAAAGGATTCCTCACCA AAGCTCAGACGCACGCCAAATATGGGTGGTGA
AA sequence Show only first row Show all	>Lus10015539 pacid=23173596 polypeptide=Lus10015539 locus=Lus10015539.g ID=Lus10015539.BGIv1.0 annot-version=v1.0 MDSLVASYGSSDEDEPHQQQPHHRHERSFSSSTSLPPARSSTNPLFSALPRPKSTPSSSSSSPSPSFFSSSLPPPKSQASIPNPKRIIQIKPPPLPTYPD DDDDEPVHPRKSERSTPVHSTSVKSFLSSIPAPKSSSALGALPSSSSSGRRSILDTSSSAPVDHASHPDPSAVIVPPQSVETEAAEATFDSAYADYSNYQ GYDSGSSYGAGLDQTVDDGGYAAATAAAYGNNWGDEAAVGAGRSSRGKRGRYEIPTGIEIIEVKQDELTKNRPREDQVKSTGIAFGPAYQPISTGKGKPT KLHKRKHQIGTLYFDMKQKEMELQERRAKGFLTKAQTHAKYGW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19270			unknown protein		Lus10015539 [exp]	0	1
AT1G29790			S-adenosyl-L-methionine-depend...		Lus10015264 [exp]	2.0	0.8586
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10014530 [exp]	3.5	0.8424
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Lus10009133 [exp]	4.2	0.8494
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Lus10041198 [exp]	11.2	0.8403
AT2G26110			Protein of unknown function (D...		Lus10024988 [exp]	11.5	0.8352
AT3G18490			Eukaryotic aspartyl protease f...		Lus10032482 [exp]	13.0	0.8431
AT1G65270			unknown protein		Lus10020224 [exp]	15.9	0.8019
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10007092 [exp]	17.9	0.7877
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10026839 [exp]	20.8	0.8238
AT5G14280	GeBP		DNA-binding storekeeper protei...		Lus10032075 [exp]	21.5	0.8187

Compare expression of checked genes

Lus10015539 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.