Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57330 501 / 1e-180 Galactose mutarotase-like superfamily protein (.1) AT3G61610 395 / 2e-138 Galactose mutarotase-like superfamily protein (.1) AT5G14500 390 / 4e-137 aldose 1-epimerase family protein (.1) AT3G01590 387 / 7e-136 Galactose mutarotase-like superfamily protein (.1.2) AT4G23730 378 / 3e-132 Galactose mutarotase-like superfamily protein (.1) AT4G25900 350 / 4e-121 Galactose mutarotase-like superfamily protein (.1) AT5G66530 142 / 4e-40 Galactose mutarotase-like superfamily protein (.1.2) AT1G55370 43 / 0.0001 NDF5 NDH-dependent cyclic electron flow 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020015 [exp] 598 / 0 AT5G57330 534 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10026106 [exp] 477 / 6e-171 AT5G57330 484 / 1e-173 Galactose mutarotase-like superfamily protein (.1) Lus10041629 [exp] 473 / 2e-169 AT5G57330 479 / 4e-172 Galactose mutarotase-like superfamily protein (.1) Lus10000414 [exp] 466 / 3e-166 AT5G57330 475 / 9e-170 Galactose mutarotase-like superfamily protein (.1) Lus10012640 [exp] 409 / 3e-144 AT3G61610 511 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10010131 [exp] 406 / 3e-143 AT3G61610 518 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10028739 [exp] 393 / 3e-138 AT4G23730 474 / 1e-170 Galactose mutarotase-like superfamily protein (.1) Lus10017549 [exp] 393 / 4e-138 AT4G23730 475 / 1e-170 Galactose mutarotase-like superfamily protein (.1) Lus10032084 [exp] 390 / 4e-135 AT5G14500 494 / 2e-176 aldose 1-epimerase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G089800 [exp] 528 / 0 AT5G57330 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.006G165400 [exp] 527 / 0 AT5G57330 525 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.001G037700 [exp] 508 / 0 AT5G57330 483 / 2e-173 Galactose mutarotase-like superfamily protein (.1) Potri.003G187300 [exp] 505 / 0 AT5G57330 475 / 3e-170 Galactose mutarotase-like superfamily protein (.1) Potri.002G167200 [exp] 408 / 6e-144 AT3G61610 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.001G344100 [exp] 399 / 3e-140 AT5G14500 501 / 0.0 aldose 1-epimerase family protein (.1) Potri.001G095300 [exp] 392 / 8e-138 AT3G61610 461 / 3e-165 Galactose mutarotase-like superfamily protein (.1) Potri.007G023200 [exp] 145 / 3e-41 AT5G66530 483 / 1e-173 Galactose mutarotase-like superfamily protein (.1.2) Potri.019G034000 [exp] 44 / 9e-05 AT1G55370 267 / 9e-87 NDH-dependent cyclic electron flow 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF01263 [flax] [poplar] Aldose_epim Aldose 1-epimerase
Representative CDS sequence Show only first row Show all	>Lus10015540 pacid=23173690 polypeptide=Lus10015540 locus=Lus10015540.g ID=Lus10015540.BGIv1.0 annot-version=v1.0 ATGGCTTCTGCTGCTGCTGCTGCTACAGGTGGCGAAAGGTTACCAGTAGAGGTGTGTAAAGGCATCAACGGCCTCGACAAGGTTGTGCTCCGTGAAGCTC GCGGCAGTTCTGCCGAGGTGTATTTGTATGGGGGTCATGTAACCTCTTGGAAAAATGACCATGGAGAGGAGTTGCTCTTCGCTATATTCAAACCTCCAAA GGCTATTCGTGGAGGCATTCCAATATGCTTCCCTCAATTTTCCAATCATGGTAGTCTTGAGGCGCATGGTTTTGCTAGGAATAGGTTTTGGAGTGTTGAG TCTGATCCACCTCCTTTTCCAACCAGTTCGACTAGTAAGGCTTATGTTGATTTGATACTTAAGCCAACTGAAGAGGATCTAAAGATCTGGCCTCATAGCT TCGAGTTCCGTTTGAGAGTAGCCTTGGGCCCTGCTGGAGATCTACTGTTGACATCTCGTGTCAGGAATACCAGCATAGATGGAAAGCCCTTCTCATTCAC TTTCGCATATCATACTTACTTTGCTGTTTCAGACATAAGTGAAGTTCGGGTTGAAGGTCTGGAGACACTTGACTACCTTGACAACCTACAAAATAAGGAG CGTTTTACCGAACAAGGAGATGCTATAACATTCGAATCAGAAATTGACAAGATTTATGTTGGCACCCCTACAAAGATCGCAATTCTGGATCATGAAAAGA AGAGGACATTCGTACTGCGCAAAGATGGGCTCCCTGATGCTGTTGTGTGGAATCCATGGGACAAAAGGGCGAAGAGTATAGCGGATCTTGGGGATGATGA CTACAAACACATGCTGTGTGTGGAAGCCGCTGCTGTCGAGAAGCCCATCACGATCAAGTCCGGGGAGGAGTGGAGAGGAAGACTAGAACTTTCTGCAGTT CCATCAAGTTACTGCAGTGGACAACTTGATCCCAAGAAAGTTCTCCTCACCAGCTGA
AA sequence Show only first row Show all	>Lus10015540 pacid=23173690 polypeptide=Lus10015540 locus=Lus10015540.g ID=Lus10015540.BGIv1.0 annot-version=v1.0 MASAAAAATGGERLPVEVCKGINGLDKVVLREARGSSAEVYLYGGHVTSWKNDHGEELLFAIFKPPKAIRGGIPICFPQFSNHGSLEAHGFARNRFWSVE SDPPPFPTSSTSKAYVDLILKPTEEDLKIWPHSFEFRLRVALGPAGDLLLTSRVRNTSIDGKPFSFTFAYHTYFAVSDISEVRVEGLETLDYLDNLQNKE RFTEQGDAITFESEIDKIYVGTPTKIAILDHEKKRTFVLRKDGLPDAVVWNPWDKRAKSIADLGDDDYKHMLCVEAAAVEKPITIKSGEEWRGRLELSAV PSSYCSGQLDPKKVLLTS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57330			Galactose mutarotase-like supe...		Lus10015540 [exp]	0	1
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10010203 [exp]	2.2	0.9239
AT5G57330			Galactose mutarotase-like supe...		Lus10020015 [exp]	3.9	0.8999
AT1G50700		CPK33	calcium-dependent protein kina...		Lus10001146 [exp]	4.6	0.8828
AT5G67590		FRO1	FROSTBITE1, NADH-ubiquinone ox...		Lus10019261 [exp]	6.5	0.9120
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10015075 [exp]	7.7	0.8913
AT4G26550			Got1/Sft2-like vescicle transp...		Lus10032895 [exp]	8.6	0.8751
AT4G20410		GAMMA-SNAP, GSN...	gamma-soluble NSF attachment p...		Lus10008061 [exp]	9.7	0.8509
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10037172 [exp]	10.2	0.8952
AT2G01490			phytanoyl-CoA dioxygenase (Phy...		Lus10007925 [exp]	11.1	0.9058
AT4G32760			ENTH/VHS/GAT family protein (....		Lus10022140 [exp]	12.4	0.8817

Compare expression of checked genes

Lus10015540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.