Plant FIBer expression Database

Lus10015544 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G11800 372 / 9e-126 endonuclease/exonuclease/phosphatase family protein (.1)
AT1G55915 44 / 0.0002 zinc ion binding (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020021
[exp]
729 / 0 AT1G11800 489 / 1e-171 endonuclease/exonuclease/phosphatase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G010400
[exp]
409 / 2e-139 AT1G11800 456 / 2e-157 endonuclease/exonuclease/phosphatase family protein (.1)
Potri.004G010900
[exp]
280 / 2e-90 AT1G11800 345 / 7e-116 endonuclease/exonuclease/phosphatase family protein (.1)
Potri.005G033000
[exp]
44 / 0.0003 AT1G55040 531 / 5e-177 zinc finger (Ran-binding) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0530 DNase_I-like PF03372 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence
>Lus10015544 pacid=23173611 polypeptide=Lus10015544 locus=Lus10015544.g ID=Lus10015544.BGIv1.0 annot-version=v1.0
ATGGCGCTCAGACTGTTGGCTTTCGGGAGCAACGCTATTGATATCTCCGTAAAGATCCCACGACCGTCGACGACTGTACAGACCTCCTCGATTCCGGCTC
TGCTCTTCTTCCCCAAACCCAAACCCACCGAAACCTTCGTCGGAAGAATGTCGTGGTCCTGCAAGAAATGCACGTTCATCAACCCTTCCTCTTCTTCTAA
TTCAGCCTGCGAGCTCTGCCTCTCACCCGTTTCTCCCACCGCCCTTTGCTCTTCTCCCAAACCGTCGGAATCCCCACGATGGTCTTGCAAGGCCTGTACT
TTCCTCAACTCCTTCAAGAATTCCGACTGTGTTATCTGTGGAACCGGGTCCCCTCCTTCCTTCTTCGACGATACTTCTCTCGACGCCCACTTGGATCCTT
CCGTTGGCTCCGTCTTCCTACCTTTATTAAGGCCTTGCAAGAGGAAGCTGCCTGAGGGATCACCGGAGTCGGCCGACGGTCCTTCTAAAATTCCGCTTCT
TTCCAAGGATTGTGGTGATGGGGATAGATTGGAATTGGGAAGAGTTAGGGCTTTAAACAAGGCTGCTTCAGTTACTGTTGTAAAGGGTGATGTTGATTTA
CCTAGAACTGGGAGCTCACTGAAAGTCTTGAGCTACAATGTTTGGTTCCGAGAGGACTTGGAATTGCAGAGCAGGATGAGAGCTATTGGGAACCTAATTC
AATTACATTCTCCTGATATTATCTGTCTTCAGTTAAGCAAGGTTCCAGTCAAATCCTTCAGCATTAGGCCTTTTAGGAACTCCGTAATGGGCAGAGAACT
ATGCATTGCTGAGCTGAAACTCGAGGGGAACATGCCGCTAGTTGTTGCCACGAGCCACCTGGAGAGCCCCTGCCCCGGGCCTCCGAAATGGGATCAGATG
TTCAGCACAGAACGTGTAGTTCAGGCAAACGAGGCCGTCGACTTTCTCAAGGAGAATCAAAATGTGATCTTTTGTGGTGATATGAATTGGAGCGACAAGT
TAGATGGGGAGTTCCCTTTACCTAGTGGATGGGTTGATGTATGGGCAGAGTTGAAGCCTGGGGACAATGGATACACGTACGATACGAAATCCAACCAAAT
GTTGACGGGAAACCGAACGCTGCAGAAAAGACTCGATCGGTTCGTATGCAATCTTCGAGATTTCAGAGCGAGCAGTATCGAAATGATTGGGAAGAAGGCG
ATACCGGGGTTGTCATATACTAAGGAGAAGAAAGTTAAGCAGGAGGTTAAAAAGCTGGAGCTTCCTGTTTTGCCAAGTGACCACTATGGTTTGCTTTTAA
CACTTTCTTCTGTCAGGTAG
AA sequence
>Lus10015544 pacid=23173611 polypeptide=Lus10015544 locus=Lus10015544.g ID=Lus10015544.BGIv1.0 annot-version=v1.0
MALRLLAFGSNAIDISVKIPRPSTTVQTSSIPALLFFPKPKPTETFVGRMSWSCKKCTFINPSSSSNSACELCLSPVSPTALCSSPKPSESPRWSCKACT
FLNSFKNSDCVICGTGSPPSFFDDTSLDAHLDPSVGSVFLPLLRPCKRKLPEGSPESADGPSKIPLLSKDCGDGDRLELGRVRALNKAASVTVVKGDVDL
PRTGSSLKVLSYNVWFREDLELQSRMRAIGNLIQLHSPDIICLQLSKVPVKSFSIRPFRNSVMGRELCIAELKLEGNMPLVVATSHLESPCPGPPKWDQM
FSTERVVQANEAVDFLKENQNVIFCGDMNWSDKLDGEFPLPSGWVDVWAELKPGDNGYTYDTKSNQMLTGNRTLQKRLDRFVCNLRDFRASSIEMIGKKA
IPGLSYTKEKKVKQEVKKLELPVLPSDHYGLLLTLSSVR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G11800 endonuclease/exonuclease/phosp... Lus10015544
[exp]
0 1
AT2G44190 EMB3116, EDE1, ... QWRF domain containing 5, EMBR... Lus10038729
[exp]
12.8 0.8910
AT4G33270 AtCDC20.1, CDC2... cell division cycle 20.1, Tran... Lus10037593
[exp]
20.2 0.8820
AT5G25090 AtENODL13 early nodulin-like protein 13 ... Lus10026880
[exp]
20.3 0.8783
AT5G43020 Leucine-rich repeat protein ki... Lus10024803
[exp]
23.9 0.8763
AT1G03470 Kinase interacting (KIP1-like)... Lus10040904
[exp]
30.1 0.8781
AT1G70340 Plant protein of unknown funct... Lus10029158
[exp]
31.1 0.8776
AT2G19520 ATMSI4, ACG1, N... MULTICOPY SUPPRESSOR OF IRA1 4... Lus10027632
[exp]
40.7 0.8721
AT1G08010 GATA GATA11 GATA transcription factor 11 (... Lus10037398
[exp]
41.7 0.8304
AT1G09130 ATP-dependent caseinolytic (Cl... Lus10020649
[exp]
41.8 0.8394
AT1G26760 SDG35, ATXR1 SET domain protein 35 (.1) Lus10037155
[exp]
43.0 0.8684

Lus10015544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.