Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04450 199 / 4e-59 WRKY ATWRKY42, WRKY42 WRKY family transcription factor (.1) AT1G62300 191 / 7e-56 WRKY ATWRKY6, WRKY6 WRKY family transcription factor (.1) AT4G22070 188 / 6e-55 WRKY ATWRKY31, WRKY31 WRKY DNA-binding protein 31 (.1) AT4G01720 151 / 1e-41 WRKY ATWRKY47, WRKY47 WRKY family transcription factor (.1) AT1G18860 143 / 2e-38 WRKY ATWRKY61, WRKY61 WRKY DNA-binding protein 61 (.1) AT1G68150 140 / 2e-38 WRKY ATWRKY9, WRKY9 WRKY DNA-binding protein 9 (.1) AT5G15130 139 / 8e-37 WRKY ATWRKY72, WRKY72 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) AT1G69810 122 / 2e-31 WRKY ATWRKY36, WRKY36 WRKY DNA-binding protein 36 (.1) AT4G31800 100 / 1e-23 WRKY ATWRKY18, WRKY18 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18, WRKY DNA-binding protein 18 (.1.2) AT5G26170 94 / 5e-23 WRKY ATWRKY50, WRKY50 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 50, WRKY DNA-binding protein 50 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035286 [exp] 190 / 2e-55 AT1G62300 324 / 2e-104 WRKY family transcription factor (.1) Lus10021554 [exp] 172 / 7e-49 AT1G62300 293 / 1e-92 WRKY family transcription factor (.1) Lus10022959 [exp] 172 / 8e-49 AT1G62300 300 / 3e-95 WRKY family transcription factor (.1) Lus10038028 [exp] 166 / 2e-47 AT4G04450 247 / 3e-76 WRKY family transcription factor (.1) Lus10020023 [exp] 141 / 3e-39 AT4G04450 89 / 2e-19 WRKY family transcription factor (.1) Lus10024246 [exp] 147 / 8e-39 AT5G15130 257 / 2e-76 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10023615 [exp] 144 / 1e-38 AT5G15130 244 / 1e-73 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10016682 [exp] 142 / 5e-38 AT1G68150 194 / 2e-57 WRKY DNA-binding protein 9 (.1) Lus10037205 [exp] 137 / 2e-36 AT5G15130 225 / 2e-67 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G007800 [exp] 206 / 3e-61 AT1G62300 391 / 1e-129 WRKY family transcription factor (.1) Potri.004G007500 [exp] 205 / 9e-61 AT4G04450 419 / 8e-141 WRKY family transcription factor (.1) Potri.014G155100 [exp] 191 / 2e-55 AT1G62300 310 / 6e-98 WRKY family transcription factor (.1) Potri.002G228400 [exp] 181 / 1e-51 AT1G62300 337 / 2e-108 WRKY family transcription factor (.1) Potri.014G111900 [exp] 166 / 7e-47 AT4G01720 298 / 1e-95 WRKY family transcription factor (.1) Potri.002G186600 [exp] 162 / 1e-45 AT4G01720 281 / 4e-89 WRKY family transcription factor (.1) Potri.015G064100 [exp] 142 / 1e-37 AT5G15130 244 / 1e-72 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Potri.001G208600 [exp] 140 / 2e-37 AT1G68150 210 / 5e-63 WRKY DNA-binding protein 9 (.1) Potri.017G079500 [exp] 139 / 9e-37 AT5G15130 284 / 6e-89 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Potri.018G019700 [exp] 104 / 7e-26 AT1G80840 137 / 9e-39 WRKY DNA-binding protein 40 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10015546 pacid=23173587 polypeptide=Lus10015546 locus=Lus10015546.g ID=Lus10015546.BGIv1.0 annot-version=v1.0 ATGAAGAAGAATGAAGTTATTTGGGTGGTGACTGTGATAGTAATTATTCATTTTTTGGTGTCTCAGGTGGCAAGACAGTTTTCGGAAAGGGGGCCGCCAT CATCAACTGCAACAGAATCATCCTCAGACGAGCGGACGAGATCAGAATCTTCCCCTCGAAACGAGAAGGGCACGATAACTACTAATGGGAATAAAACGGC TATTGTTGATCAGGAGTACTGCAGTCGTTTAGATTCCAATCAACACAATTCTCAACTGGGAAGAATCAACCCTAATACATCCAACTCTGACGCTGCCGGT TCTGAAACACCCAAGAACATGGAGCAACAATCCACTACTACTACCACCATTAGAAAAGCCCGTGTCTCTGTCCGAGCCCGCTCTGAGGCCCCCATGATAT CAGACGGATGCCAATGGAGAAAATACGGACAAAAGATGGCGAAAGGTAACCCGTGTCCAAGAGCATATTACCGTTGCACAATGGCAACGGCATGTCCCGT ACGTAAGCAGGTGCAACGCTGCGCAGAGGACAAAACAATCTTGATTACTACTTACGAAGGCAACCATAACCACCCACTCCCACCCGCCGCCATGGCAATG GCTTCCACCACAACAGCCGCCGCCACTATGTTACTCTCCGGCTCAACCTCCACCACCGACCACGCCGCTACCATTACTAGTACTACTACTCATGACCTGT TAACCGCCAACTTGCTATCCAGAGCGATTCTTCCGCCGCCAAACACGGGTCTCAACAACAACCACGTGGCAACCATCTCGGCTTCGGCTCCTTTCCCCAC TGTCACATTGGACCTTACTGCCCGAGGTCAGCCAGTGTATTATAATCAGTCAAAATTCTCCGGCCTCCAGCTGTCACACCAACAGTACCCGGCCGACAGA TCAGTCATGCCGATCATGATGCTACCGCCGCCGCCACCTCAGGCTTCGTTAACGGAGTCGGTCAGTGCTGCCACCGCTGCTGTCGAGTGCGCCCCCCCGC TGCTATTCTTCCGGATCTTAACTTCCCCGCCGCGCTTGCTGCGGCTATCTCCTCCATCATAG
AA sequence Show only first row Show all	>Lus10015546 pacid=23173587 polypeptide=Lus10015546 locus=Lus10015546.g ID=Lus10015546.BGIv1.0 annot-version=v1.0 MKKNEVIWVVTVIVIIHFLVSQVARQFSERGPPSSTATESSSDERTRSESSPRNEKGTITTNGNKTAIVDQEYCSRLDSNQHNSQLGRINPNTSNSDAAG SETPKNMEQQSTTTTTIRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMATACPVRKQVQRCAEDKTILITTYEGNHNHPLPPAAMAM ASTTTAAATMLLSGSTSTTDHAATITSTTTHDLLTANLLSRAILPPPNTGLNNNHVATISASAPFPTVTLDLTARGQPVYYNQSKFSGLQLSHQQYPADR SVMPIMMLPPPPPQASLTESVSAATAAVECAPPLLFFRILTSPPRLLRLSPPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10015546 [exp]	0	1
					Lus10041163 [exp]	2.2	0.9950
AT3G61510		AT-ACS1, ACS1	ARABIDOPSIS THALIANA 1-AMINOCY...		Lus10036396 [exp]	2.4	0.9932
					Lus10000859 [exp]	3.2	0.9896
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10020023 [exp]	3.5	0.9929
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10002450 [exp]	3.9	0.9927
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10023280 [exp]	4.0	0.9899
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10021314 [exp]	4.2	0.9931
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034838 [exp]	5.7	0.9891
					Lus10006567 [exp]	7.2	0.9883
AT1G80450			VQ motif-containing protein (....		Lus10026247 [exp]	7.9	0.9874

Compare expression of checked genes

Lus10015546 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.