Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04480 94 / 1e-23 unknown protein AT4G22030 93 / 5e-23 F-box family protein with a domain of unknown function (DUF295) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020029 [exp] 177 / 5e-55 AT4G22030 351 / 2e-115 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10020028 [exp] 176 / 2e-54 AT4G04480 335 / 2e-112 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G009500 [exp] 121 / 7e-34 AT4G22030 410 / 8e-139 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.004G009000 [exp] 121 / 8e-34 AT4G22030 392 / 8e-132 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.004G008800 [exp] 118 / 1e-32 AT4G22030 395 / 6e-133 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.004G009300 [exp] 118 / 1e-32 AT4G22030 390 / 7e-131 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.011G007000 [exp] 115 / 2e-31 AT4G22030 367 / 8e-122 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.011G006900 [exp] 115 / 2e-31 AT4G22030 362 / 9e-120 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.004G009400 [exp] 100 / 8e-26 AT4G04480 327 / 3e-109 unknown protein Potri.004G008000 [exp] 100 / 8e-26 AT4G04480 333 / 2e-111 unknown protein Potri.004G009100 [exp] 98 / 5e-25 AT4G04480 332 / 5e-111 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015548 pacid=23173631 polypeptide=Lus10015548 locus=Lus10015548.g ID=Lus10015548.BGIv1.0 annot-version=v1.0 ATGTCCATGTGTTTGCCCTCCGGGGACCTTCCCCCCCCCGGCTTGGCGCCCGCTGCCTCTGCCGCCGGACTGGCGTCTGTGGCGGTGGGTGCTGGTGCTC TGGCGGCGGCGGTCAACACGTTGGAACACGGGGGCCAGATCGGGATGGTGGTGGAGATGTACAGGAATTGTGCGGGGGTTTTCGATCATATGGAGGAGTC TATCGAGGCGAGTGTGGAGGAGTCCGACGTGGAGAAGAGGGAAAGCGGACGTGTGTTGGAAATGAAGGTGGCGTTAGCACTCGGAAGGAGTCCGTCGGAG CTTAGAGAGCTTGCTGGGAAGTGCAGTTACAGTCAAGATGAAGGGACTCCTTTGGATGAGTTTGCCAGCAAGCTCTTCTAA
AA sequence Show only first row Show all	>Lus10015548 pacid=23173631 polypeptide=Lus10015548 locus=Lus10015548.g ID=Lus10015548.BGIv1.0 annot-version=v1.0 MSMCLPSGDLPPPGLAPAASAAGLASVAVGAGALAAAVNTLEHGGQIGMVVEMYRNCAGVFDHMEESIEASVEESDVEKRESGRVLEMKVALALGRSPSE LRELAGKCSYSQDEGTPLDEFASKLF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04480			unknown protein		Lus10015548 [exp]	0	1
AT4G01130			GDSL-like Lipase/Acylhydrolase...		Lus10012644 [exp]	2.8	0.7821
AT3G52770		ZPR3	LITTLE ZIPPER 3, protein bindi...		Lus10017055 [exp]	3.0	0.7838
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10036229 [exp]	5.7	0.7939
AT3G25280			Major facilitator superfamily ...		Lus10038222 [exp]	8.8	0.7323
AT4G15130		ATCCT2	phosphorylcholine cytidylyltra...		Lus10000195 [exp]	9.3	0.7862
AT1G08650		ATPPCK1, PPCK1	phosphoenolpyruvate carboxylas...		Lus10011823 [exp]	19.2	0.6834
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Lus10035570 [exp]	19.4	0.7462
					Lus10033943 [exp]	19.8	0.7482
					Lus10025936 [exp]	22.1	0.7261
AT5G50740			Heavy metal transport/detoxifi...		Lus10038785 [exp]	22.2	0.7555

Compare expression of checked genes

Lus10015548 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.