Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22130 916 / 0 SRF8 STRUBBELIG-receptor family 8 (.1.2) AT1G53730 572 / 0 SRF6 STRUBBELIG-receptor family 6 (.1.2) AT1G78980 564 / 0 SRF5 STRUBBELIG-receptor family 5 (.1) AT5G06820 462 / 1e-150 SRF2 STRUBBELIG-receptor family 2 (.1) AT3G14350 407 / 1e-130 SRF7 STRUBBELIG-receptor family 7 (.1.2.3) AT2G20850 380 / 5e-119 SRF1 STRUBBELIG-receptor family 1 (.1) AT4G03390 379 / 9e-119 SRF3 STRUBBELIG-receptor family 3 (.1) AT1G11130 327 / 3e-99 SRF9, SCM, SUB STRUBBELIG-RECEPTOR FAMILY 9, SCRAMBLED, Leucine-rich repeat protein kinase family protein (.1) AT3G13065 319 / 4e-97 SRF4 STRUBBELIG-receptor family 4 (.1) AT5G02800 273 / 1e-83 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020030 [exp] 1216 / 0 AT4G22130 947 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10039795 [exp] 518 / 3e-172 AT4G03390 892 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10037464 [exp] 441 / 1e-143 AT1G53730 824 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10003926 [exp] 442 / 3e-143 AT1G53730 885 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10031628 [exp] 388 / 7e-122 AT4G03390 870 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10033711 [exp] 377 / 4e-118 AT4G03390 825 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10033333 [exp] 374 / 1e-117 AT1G78980 803 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10018563 [exp] 369 / 9e-116 AT4G03390 773 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10034790 [exp] 366 / 7e-115 AT1G78980 768 / 0.0 STRUBBELIG-receptor family 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G005301 [exp] 1012 / 0 AT4G22130 906 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.011G010500 [exp] 984 / 0 AT4G22130 916 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.003G073700 [exp] 610 / 0 AT1G53730 575 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.007G002600 [exp] 562 / 0 AT1G78980 499 / 1e-168 STRUBBELIG-receptor family 5 (.1) Potri.001G161600 [exp] 444 / 5e-144 AT1G53730 590 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.019G103900 [exp] 405 / 2e-128 AT4G03390 801 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.014G001200 [exp] 391 / 5e-124 AT1G78980 817 / 0.0 STRUBBELIG-receptor family 5 (.1) Potri.013G144600 [exp] 387 / 1e-121 AT4G03390 783 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.004G037000 [exp] 367 / 1e-114 AT4G03390 645 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.011G045600 [exp] 365 / 2e-113 AT4G03390 617 / 0.0 STRUBBELIG-receptor family 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10015549 pacid=23173650 polypeptide=Lus10015549 locus=Lus10015549.g ID=Lus10015549.BGIv1.0 annot-version=v1.0 ATGCTCTACCTCCTTCTTCCATTATTCCTCTCCCTCCTTCATCCTGTTCACTCCACTACTGATCCCCCACGTTGTGACCCCCCCGACGTTCAAGCTCTGC AGGTGGTGTACAGCTCCCTTAACAGCCCTTCCCAGCTAACCAATTGGAAGAGCAATGGTGGGGATCCCTGTTCCGAGTCTTGGAAAGGTGTTACTTGCCT GGGTTCAGCTGTGGTTTCCCTCCAGATTTCCGGTTTGGGGCTCACTGGGTCGATGGGTTACTTGCTTTCCGGCCTTACCTCCTTGAAAACCATGGATCTG AGTAACAACAATTTTCGCGATTCGATTCCTTATCAAATGCCGCCCAATCTCACATCCTTAAATTTGGCCAGAAACAACTTGACTGGAAATCTGCCCTATT CCTTCAATACCATGGCTTCCCTCAATTACTTGAATGTAAGCGGCAATTCCCTTTCCCAAGCAGTTGGTGATGTGTTCACCAATCTTTCACTCCTAGATAC CCTTGATCTGTCTTTCAACAACTTCAGCGGTGATCTTCCCGCTTCATTTACTTCACTCACCAATCTTTCTACATTAGATGTACAGAACAATCAGCTGACC GGCTCTCTTAATGCTCTTACCGCCCTTCCTTTAAGTACCCTGAATGTTGCAAATAACCATTTTAATGGATGGATCCCTCGAGAGCTCAGTTCAATTCCCA ATTTTAAATTTGAAGGGAATTCCTTTGACAATGGCCCTGCTCCTCCTCCTCCTCCCTTCACTTCTCCATCTCCCGGTAGGCCTCGTAACAATCGTACTCA TCCAGGAGCAGGGGGAACACCTGCATCTCCATCCTCGAACGGTCAATCATCACAGTCATCTAAGGGACTATCAGTGGGAGCTATTGTCGGCATAAGTCTA GGTTCTGCTTTCCTGGTTGGCATTCTGATAGTGCTAGTATTTTGCATCAGGAAAAGTAAAACAAAAGAAGTTGGTGTTATTGCTTCCAATGGGGAAAGTC ATCCTGCCAGCACAAATAACATAGTTCAAATGGAGATGCAAGAGCAGAGGATGAAGAACATGGCTGCTGTTACAGATGTCAAGCAACTTGTAGCTGAAAA GTCTGCGATGGATAAGCTGCAAGGGCATTCTGGTTCTATCAAGAGAATGAGATCGCCGATGACTGCTACTTCTTACACAGTTGCCACCCTGCAGACAGCA ACAAATAGTTTTAGTCAAGAGTTTCTAATCGGAGAAGGTTCTCTGGGGCGCGTTTACAGAGCCGAGTTTCCTAATGGAAAGACATTGGCGGTGAAGAAGA TCGACAATGCAGCGTTTTCACTACAAGAAGAAGACAACTTTCTTGAAGCTGTTTCAAACATGTCGCGGCTAAGGCACCCGAACATTGTGTCGATGGTGGG GTATTGTGTAGAGCACGGGCAGCGTCTTTTGGTTTATGAATATATTGGGAATGGAAACCTGCATGATATCCTGCACTTTGCTGATGATGACGGCAAGAAG TTGTCTTGGAATGCACGTGTCAGAGTAGCACTTGGCACTGCCAGGGCTTTAGAGTACTTGCATGAAGTCTGCTTACCGTCAGTTGTACATAGAAACTTCA AATCAGCAAACATTTTGTTGGATGAAGAGCTAAATCCCCACTTATCCGACTGTGGTTTGGCTGCTTTGACACCAAATACAGAGAGACCTGTTTCGACACA AGTGGTTGGTTCATTTGGTTACAGTGCTCCTGAATTTGCCTTGTCAGGCGTGTACACTGTTAAAAGCGATGTTTACAGCTTTGGAGTGGCCATGTTAGAG CTGTTGACTGGTAGAAAGCCACTGGACAGTTCAAGGCCGAGGCCGGAGCAGTCACTTGTGAGATGGGCAACCCCGCAACTGCATGACATAGATGCATTAT CGAAGATGGTTGATCATGCACTGAACGGCATGTACCCTGCCAAATCCCTATCTCGTTTCGCAGACATAATCGCACTGTGTGTCCAGCCGGAACCTGAGTT TAGGCCACCAATGTCAGAGGTAGTGCAAGCGCTAGTAAGGTTGGTGCAAAGGGCAAGCGTGGTGAAGAGGCGGTCCAGCGACGAATCCGGATTCTCGTAC AGGACACCTGACCATGATGCAATAGATCTGTCGTTTAGATTCCAACTTACAAACGGGCGCCCCAAATTAAATTTCACGGATGGGAGTATTGGTACGTCGG GACTGGAACTCCCTCCTTCTCAACGCCATCAACATGTCCATCCTTCAGCCACCACCATCACCGCCGTAACCGCCGGCGGCGGCGACAACGACCACCTACC TTCCGCAATCGGATCAGCCATTCTTTTCTCCGCCGCCACGGGTCTCCTCATGCTCATGAATACAATTCAGCCCTCCCAGCTCGCAGAAGAACAGCGCAAC GCCACCAGGTTGTTCAAACACCTCCAATCCCAGTTATTACAAACTAAAGCAGTGGGGCCCATCACAGAGTCCGACGTGGAAGACGCGGTTGAGAAGGTGT TAGCACTTGACCGCGCTTACCCGCTCCCTCTACTCGGTGGCAAAATGGTCACCAAGTTCCCCGCCCAATTCAAACCTGCCGTTTGGTGGCCCCACCAACA ATCCAGTACTACTACTAGTACAAAAATTAGTACGATTAGTTCTCGTACTAATACGGGACCACCAACGGGTGGTCCAAGGAGCTGGAGACCGAGATGA
AA sequence Show only first row Show all	>Lus10015549 pacid=23173650 polypeptide=Lus10015549 locus=Lus10015549.g ID=Lus10015549.BGIv1.0 annot-version=v1.0 MLYLLLPLFLSLLHPVHSTTDPPRCDPPDVQALQVVYSSLNSPSQLTNWKSNGGDPCSESWKGVTCLGSAVVSLQISGLGLTGSMGYLLSGLTSLKTMDL SNNNFRDSIPYQMPPNLTSLNLARNNLTGNLPYSFNTMASLNYLNVSGNSLSQAVGDVFTNLSLLDTLDLSFNNFSGDLPASFTSLTNLSTLDVQNNQLT GSLNALTALPLSTLNVANNHFNGWIPRELSSIPNFKFEGNSFDNGPAPPPPPFTSPSPGRPRNNRTHPGAGGTPASPSSNGQSSQSSKGLSVGAIVGISL GSAFLVGILIVLVFCIRKSKTKEVGVIASNGESHPASTNNIVQMEMQEQRMKNMAAVTDVKQLVAEKSAMDKLQGHSGSIKRMRSPMTATSYTVATLQTA TNSFSQEFLIGEGSLGRVYRAEFPNGKTLAVKKIDNAAFSLQEEDNFLEAVSNMSRLRHPNIVSMVGYCVEHGQRLLVYEYIGNGNLHDILHFADDDGKK LSWNARVRVALGTARALEYLHEVCLPSVVHRNFKSANILLDEELNPHLSDCGLAALTPNTERPVSTQVVGSFGYSAPEFALSGVYTVKSDVYSFGVAMLE LLTGRKPLDSSRPRPEQSLVRWATPQLHDIDALSKMVDHALNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRRSSDESGFSY RTPDHDAIDLSFRFQLTNGRPKLNFTDGSIGTSGLELPPSQRHQHVHPSATTITAVTAGGGDNDHLPSAIGSAILFSAATGLLMLMNTIQPSQLAEEQRN ATRLFKHLQSQLLQTKAVGPITESDVEDAVEKVLALDRAYPLPLLGGKMVTKFPAQFKPAVWWPHQQSSTTTSTKISTISSRTNTGPPTGGPRSWRPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22130		SRF8	STRUBBELIG-receptor family 8 (...		Lus10015549 [exp]	0	1
AT4G22130		SRF8	STRUBBELIG-receptor family 8 (...		Lus10020030 [exp]	1.0	0.9547
AT5G20590		TBL5	TRICHOME BIREFRINGENCE-LIKE 5 ...		Lus10027637 [exp]	2.2	0.8133
AT3G57400			unknown protein		Lus10042067 [exp]	3.0	0.8224
AT5G01020			Protein kinase superfamily pro...		Lus10036762 [exp]	4.5	0.8247
AT1G07590			Tetratricopeptide repeat (TPR)...		Lus10042757 [exp]	4.5	0.8176
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Lus10007715 [exp]	4.9	0.8009
AT1G27200			Domain of unknown function (DU...		Lus10010731 [exp]	11.8	0.7550
AT5G60370			unknown protein		Lus10038466 [exp]	12.0	0.7633
AT2G40280			S-adenosyl-L-methionine-depend...		Lus10040950 [exp]	14.9	0.7628
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10033597 [exp]	16.0	0.7816

Compare expression of checked genes

Lus10015549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.