Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04320 159 / 3e-45 malonyl-CoA decarboxylase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020031 [exp] 367 / 7e-126 AT4G04320 575 / 0.0 malonyl-CoA decarboxylase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G005500 [exp] 164 / 5e-47 AT4G04320 700 / 0.0 malonyl-CoA decarboxylase family protein (.1.2) Potri.011G010400 [exp] 163 / 8e-47 AT4G04320 699 / 0.0 malonyl-CoA decarboxylase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF05292 [flax] [poplar] MCD Malonyl-CoA decarboxylase C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10015550 pacid=23173679 polypeptide=Lus10015550 locus=Lus10015550.g ID=Lus10015550.BGIv1.0 annot-version=v1.0 ATGAACCAGCATCTCGGGCTCCACCTTCAGCTTACTGCTGGTGAATTTCACTTCCCTACTTACCTTTCCGTCACTTATGTTGCTGCTTCTAATCCTCTCC TTCCTATCTCAGGCGACGATGGAACTGACTCCAGTTCTCCTCATAATGAAGCCATGCTTTCTGCTTTCTACCGCATCGAAAGAAACCTCAGACAGGCCCT CAAGCCTGCTTATGATGTTCTCTTTGAGCGACTTAACACTCACCCTGGCGGCTTGAGATTCCTCTCCAACCTTCGTGCTGATGTATTGTCCATTCTACAA GACCAAAATGTCGCATCTCTGCGGGCCTTAGACACCTGCTTGAAGGAGAAACTTAGAACTTGGCTTAGTCCTTTTGCATTAGAGCTTCACCACATTACCT GGGACGATCCTTCTTCTTTGCTTGAGAAAATTGTGGCTTATGAGGCTGGCTTGGCAGGAATAAACCTTGGCAAGTTTCTTATCAAACGTGTGATCACGTT GGTGAAAAGGGATATGCCTCACATATCAAACTTACTTGAGCCAGATGAAGAAAGCCTCCTCATGAACTCCTCGTCGGAGACATGTGCAGGAAAAAGTGGC ATGGAAGTGATATTGAGCATGCTGACATCGAGCACATATGACTGGGCCTCCAATGCTGAAATGGTTTCAGCACTGAAGTCCCCGCTCATGAGACTGTGTG CCAGGTACTCCTATATAAGCTCATGTTTGAAAATATTTGCACACTATATAGCCCATGTTGTGACAACACTTTGA
AA sequence Show only first row Show all	>Lus10015550 pacid=23173679 polypeptide=Lus10015550 locus=Lus10015550.g ID=Lus10015550.BGIv1.0 annot-version=v1.0 MNQHLGLHLQLTAGEFHFPTYLSVTYVAASNPLLPISGDDGTDSSSPHNEAMLSAFYRIERNLRQALKPAYDVLFERLNTHPGGLRFLSNLRADVLSILQ DQNVASLRALDTCLKEKLRTWLSPFALELHHITWDDPSSLLEKIVAYEAGLAGINLGKFLIKRVITLVKRDMPHISNLLEPDEESLLMNSSSETCAGKSG MEVILSMLTSSTYDWASNAEMVSALKSPLMRLCARYSYISSCLKIFAHYIAHVVTTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04320			malonyl-CoA decarboxylase fami...		Lus10015550 [exp]	0	1
AT3G49290		ABIL2	ABL interactor-like protein 2 ...		Lus10032421 [exp]	6.6	0.8016
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10020556 [exp]	7.7	0.8643
AT1G49330			hydroxyproline-rich glycoprote...		Lus10015036 [exp]	9.5	0.8113
AT5G15070			Phosphoglycerate mutase-like f...		Lus10005263 [exp]	11.0	0.8204
AT5G06800	GARP		myb-like HTH transcriptional r...		Lus10023816 [exp]	11.2	0.8433
AT2G37460			nodulin MtN21 /EamA-like trans...		Lus10025308 [exp]	13.2	0.8326
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10027279 [exp]	14.7	0.8351
AT2G46495			RING/U-box superfamily protein...		Lus10025546 [exp]	16.9	0.8390
AT4G15250	CO	COL11	B-box type zinc finger protein...		Lus10039695 [exp]	19.4	0.7774
AT4G04650			RNA-directed DNA polymerase (r...		Lus10008147 [exp]	19.9	0.7150

Compare expression of checked genes

Lus10015550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.