Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22120 1132 / 0 ERD (early-responsive to dehydration stress) family protein AT4G04340 1099 / 0 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2), ERD (early-responsive to dehydration stress) family protein (.3) AT1G11960 1063 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT3G21620 1025 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT1G62320 1013 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT4G15430 957 / 0 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2) AT4G02900 953 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT1G32090 810 / 0 early-responsive to dehydration stress protein (ERD4) (.1) AT3G01100 375 / 3e-119 ATHYP1, HYP1 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) AT1G69450 330 / 7e-102 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020032 [exp] 1463 / 0 AT4G22120 1186 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10002996 [exp] 1110 / 0 AT4G22120 1087 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10024477 [exp] 1105 / 0 AT1G11960 1072 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10035300 [exp] 1048 / 0 AT3G21620 1146 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10030024 [exp] 1048 / 0 AT3G21620 1147 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10000660 [exp] 962 / 0 AT4G02900 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10028000 [exp] 962 / 0 AT4G02900 1116 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10002133 [exp] 879 / 0 AT1G32090 1136 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Lus10005223 [exp] 369 / 3e-116 AT3G01100 895 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G009900 [exp] 1157 / 0 AT4G22120 1142 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G005900 [exp] 1136 / 0 AT4G22120 1151 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G006100 [exp] 1122 / 0 AT4G22120 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G006000 [exp] 1104 / 0 AT4G22120 1139 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.014G156100 [exp] 1090 / 0 AT3G21620 1104 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.002G226800 [exp] 1076 / 0 AT3G21620 1105 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.003G099800 [exp] 841 / 0 AT1G32090 1094 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.001G133800 [exp] 830 / 0 AT1G32090 1061 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.004G115800 [exp] 400 / 1e-128 AT3G01100 866 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Potri.010G164100 [exp] 382 / 1e-121 AT1G69450 844 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0416 [flax] [poplar] Anoctamin-like PF02714 [flax] [poplar] RSN1_7TM Calcium-dependent channel, 7TM region, putative phosphate
Representative CDS sequence Show only first row Show all	>Lus10015551 pacid=23173684 polypeptide=Lus10015551 locus=Lus10015551.g ID=Lus10015551.BGIv1.0 annot-version=v1.0 ATGGCTACGGTGGTAGATATCTCGGTTTCAGCTGGGATCAATCTCCTCACTGCCTTCATCTTCCTCTTGGCCTTTGCCTTCTTGAGGCTCCAGCCGTTCA ATGACCGCGTCTACTTCCCCAAATGGTACCTCAAAGGCCTTCGCCATAGCCCGGCCACCGGCGCCGGCGCTGCTGTCTCTCGCGTCGTCAACTTGAACTT CTCTTCGTACCTCCGATTCCTCAATTGGATTCCTGATGCTCTCAAGATGCCTGAGCCTGAACTCATTGACCACGCCGGCCTTGACTCCGCCGTCTACCTC CGCATTTACCTCTTGGGGCTGAAGATCTTCGTCCCCATCACAGCTCTTGCGTGGGCTGTCCTCTTCCCGGTTAACTTGACTAACCAGACCCTGGAGAAGG CTGGTAATGTCACCTCCAGCGACATTGACAAGCTCTCAATCTCCAATATCCCGCTTGAATCTCAACGATTTTGGGCGCATATAGTTATGGCTTATGCATT TACGTTTTGGACCTTCTATATATTGATGAAGGAGTATGAGAAAGTTGCTTCCATGCGATTGCAATTCATGGCCTCCGAGAAACGACGCCCAGATCAATAC ACAGTCCTTGTTAGGAATGTGCCACCGGATCCTGATGAATCTGTGAGTGAGCTTGTGGAACACTTTTTCCTGGTCAATCATCCAGATAACTATCTCACAA ATCAGGTGGTATACAATGCAAACAAACTAGCTAGTTTAGTGAAGAAGAAGAAAAGCACGCGGAATAGGCTGGACTATTACCAACTTAAGTATTCAAGGAA TCAAACACACCGCCCTATGATTAAGACTGGTTTTCTTGGACTCCGGGGTGAAAAAGTGGATGCTATTGATTTCTACACCGCCAAGATGGAGAAGCTATCC ATGGAAATAGCGGAAGAGAGGGCAAGGGTTGCCAAGGATCCAAACTCTATCATGCCAGCGGCTTTCGTCTCATTCAAAACTAGATGGGGTGCAGCTGTTT GCGCACAAACTCAGCAAGCAAGAAACCCTACTTTGTGGTTGACGGAGTGGGCGCCAGAGCCACGCGATGTATATTGGAAGAACCTTGCCATTCCCTATGT GTCACTTACAGTGAGGCGGCTTTTAGTTGGGGTTGCTTTCTTTTTCCTGACCTTTTTCTTTATGATCCCTATTGCAATGGTGCAATCTCTGGCAAGTATT GAAGGAATCGAGAAGGCAGCACCTTGGCTGGAGCCCATCATTGAAGCAAAATTTATCAAGTCCGTTGTTCAAGGCTTTCTCCCTGGCATCGCCCTCAAGC TATTCTTGATATTCCTACCAACGATTCTGATGATCATGTCTAAATTTGAGGGCTTCACTTCCTTGTCCTCTCTGGAGAGGAGAGCAGCGACAAGGTTTTA TATATTTAACATCATCAATGTCTTCCTTGGAAGTATTATTGCTGGAACTGCATTTGAACAGCTGAATACCTTCATGAAACAGTCCACTAGCGATATCCCA AAGATCATTGGTGTGGCAATTCCGATGAAAGCAACTTTCTTCATAACATATATCATGGTTGATGGCTGGGCTGGAATCGCTGGAGAAATTCTGATGTTGA AACCGTTGATAATTTACCACTTGAAGAACTTCTTTCTGGTGAAAACTGAAAAGGATAGGGAAGAAGCAATGGATCCCGGGAGTCTCGGGTTTAATACAGG AGAGCCTCGTATACAGTTCTATTTCCTCCTGGGACTTGTGTATGCACCAGTGACACCCATCCTTCTACCGTTCATCTTAATTTTCTTTGCCTTTGCCTAC ATTGTGTTTCGCCACCAGATTATAAATGTGTACAATCAAGAGTACGAGAGTGCTGCGGCATTTTGGCCAGCGGTGCATGGGCGTGTTCTTATCGCACTTA TAATTTCACAGTTGCTGATGATGGGGCTGTTGACTACAAAGAAAGCTGCTCTGGCGACTCCGTTTCTGATAGCTCTTCCGGTGCTCACAATTTGGTTCTA CAAATTCTGCCAGGGCCGATATGAACCTGCATTTGTCAGATATCCATTGCAGGCAAGTGGTTTTTCTTATAATCCGACTGTTATCCTTGGTGAAGCAAAG ATGAAGGATACCCTGGAGCATGCGAGGGAGCCCAACTTGAACCTGAAAGGATACCTGCAACAGGCATACGTTCATCCGGTTTTCAAGGGAGGGGACGACG ACGACGACGAAGAAGAGGAGTATGGGAAGTTGGCTTATTCAAATGGGAAGATTGGTGATAGCGATACGGCCCTGGTTCCTACAAAGCGGCAATCAAGAAG GAACACACCAGCTCCGAGTAGAGTAAGTGCCGGATCGTCTCCAGGGGAGAGAAGTGTTTCCATGGGAGGCCTCCCTCAACCATAA
AA sequence Show only first row Show all	>Lus10015551 pacid=23173684 polypeptide=Lus10015551 locus=Lus10015551.g ID=Lus10015551.BGIv1.0 annot-version=v1.0 MATVVDISVSAGINLLTAFIFLLAFAFLRLQPFNDRVYFPKWYLKGLRHSPATGAGAAVSRVVNLNFSSYLRFLNWIPDALKMPEPELIDHAGLDSAVYL RIYLLGLKIFVPITALAWAVLFPVNLTNQTLEKAGNVTSSDIDKLSISNIPLESQRFWAHIVMAYAFTFWTFYILMKEYEKVASMRLQFMASEKRRPDQY TVLVRNVPPDPDESVSELVEHFFLVNHPDNYLTNQVVYNANKLASLVKKKKSTRNRLDYYQLKYSRNQTHRPMIKTGFLGLRGEKVDAIDFYTAKMEKLS MEIAEERARVAKDPNSIMPAAFVSFKTRWGAAVCAQTQQARNPTLWLTEWAPEPRDVYWKNLAIPYVSLTVRRLLVGVAFFFLTFFFMIPIAMVQSLASI EGIEKAAPWLEPIIEAKFIKSVVQGFLPGIALKLFLIFLPTILMIMSKFEGFTSLSSLERRAATRFYIFNIINVFLGSIIAGTAFEQLNTFMKQSTSDIP KIIGVAIPMKATFFITYIMVDGWAGIAGEILMLKPLIIYHLKNFFLVKTEKDREEAMDPGSLGFNTGEPRIQFYFLLGLVYAPVTPILLPFILIFFAFAY IVFRHQIINVYNQEYESAAAFWPAVHGRVLIALIISQLLMMGLLTTKKAALATPFLIALPVLTIWFYKFCQGRYEPAFVRYPLQASGFSYNPTVILGEAK MKDTLEHAREPNLNLKGYLQQAYVHPVFKGGDDDDDEEEEYGKLAYSNGKIGDSDTALVPTKRQSRRNTPAPSRVSAGSSPGERSVSMGGLPQP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22120			ERD (early-responsive to dehyd...		Lus10015551 [exp]	0	1
AT5G05200			Protein kinase superfamily pro...		Lus10012865 [exp]	2.0	0.9220
AT4G16650			O-fucosyltransferase family pr...		Lus10007792 [exp]	3.5	0.8955
AT1G07200			Double Clp-N motif-containing ...		Lus10028281 [exp]	4.0	0.9093
AT5G67130			PLC-like phosphodiesterases su...		Lus10009368 [exp]	5.0	0.8943
AT5G06470			Glutaredoxin family protein (....		Lus10021255 [exp]	5.7	0.8701
AT1G72790			hydroxyproline-rich glycoprote...		Lus10008464 [exp]	6.9	0.8757
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Lus10029804 [exp]	6.9	0.8917
AT3G21670			Major facilitator superfamily ...		Lus10035317 [exp]	7.3	0.9015
AT2G40130			Double Clp-N motif-containing ...		Lus10040206 [exp]	11.0	0.8759
AT5G62620			Galactosyltransferase family p...		Lus10037238 [exp]	11.2	0.8677

Compare expression of checked genes

Lus10015551 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.