Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04350 1325 / 0 EMB2369 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1) AT1G14610 97 / 3e-20 VALRS, TWN2 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) AT5G49030 95 / 1e-19 OVA2 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) AT5G16715 66 / 1e-10 EMB2247 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) AT4G10320 61 / 4e-09 tRNA synthetase class I (I, L, M and V) family protein (.1) AT1G09620 56 / 1e-07 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) AT4G13780 45 / 0.0004 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020041 [exp] 232 / 7e-70 AT4G04350 171 / 7e-49 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10020034 [exp] 110 / 1e-27 AT4G04350 102 / 1e-25 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10034788 [exp] 91 / 2e-18 AT1G14610 1508 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Lus10033331 [exp] 91 / 3e-18 AT1G14610 1580 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Lus10024041 [exp] 67 / 6e-11 AT4G10320 1819 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10041706 [exp] 67 / 8e-11 AT4G10320 1820 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10028505 [exp] 65 / 4e-10 AT5G16715 1520 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Lus10034171 [exp] 58 / 3e-08 AT5G49030 1530 / 0.0 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) Lus10024704 [exp] 49 / 2e-05 AT1G09620 1696 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G009600 [exp] 1365 / 0 AT4G04350 1443 / 0.0 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.005G087850 [exp] 92 / 1e-18 AT1G14610 1503 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Potri.007G004100 [exp] 88 / 2e-17 AT1G14610 1601 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Potri.010G014500 [exp] 82 / 2e-15 AT5G49030 1612 / 0.0 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) Potri.017G124500 [exp] 77 / 5e-14 AT5G16715 1627 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.007G126501 [exp] 68 / 3e-11 AT4G10320 1167 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.017G033200 [exp] 68 / 4e-11 AT4G10320 1940 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.004G226700 [exp] 54 / 4e-07 AT1G09620 1647 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.003G003900 [exp] 53 / 1e-06 AT1G09620 1627 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.001G317500 [exp] 49 / 1e-05 AT4G13780 1260 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00133 [flax] [poplar] tRNA-synt_1 tRNA synthetases class I (I, L, M and V) CL0258 [flax] [poplar] DALR PF08264 [flax] [poplar] Anticodon_1 Anticodon-binding domain of tRNA ligase
Representative CDS sequence Show only first row Show all	>Lus10015552 pacid=23173652 polypeptide=Lus10015552 locus=Lus10015552.g ID=Lus10015552.BGIv1.0 annot-version=v1.0 ATGATGGAGTTTAGGTTGACTACCCAAACCCCAATCCTCTTCCTTCCTTCTCTTCCCTTTCCCTCCTCCTCCGCCTCCTCTCGCCGGAGGTCTCGACAGT CGTCTCTGTCTCAACCTCCTCCTCTTCCTCCCCGTTCCTTCATTCAACGAAATGCAATTCCCTTTTCTCCTATTCTTCGGACTTCAGAGACTGCGCGGAA TTGCAGTTGCAGCAGCAGCTCAGGAGCGAGTCAACAATTGAGTGAAGAGAAGAAGAAACAACCTCCTCCCAAAAGATCTTACCCTTTCCATGAAATTGAG CCCAAATGGCAGCTCTATTGGGAACATAATTCCACTTTCCGGACACCTGACGATATCGACACCTCCAAGCCCAAGTTTTATGTCCTCGACATGTTCCCCT ATCCCAGTGGGGCTGGTTTACACGTTGGGCATCCACTTGGGTATACTGCCACCGACATTCTTGCTAGGTATAAGCGAATGCAGGGTTATAATGTTTTGCA CCCTATGGGATGGGATGCCTTTGGTTTGCCCGCTGAGCAATACGCCATTGATACAGGGACGCATCCCAAAATCACAACATTTAGGAACATCGATCGATTT CGCACCCAGCTAAAATCTTTGGGATTCTCTTATGATTGGGAACGTGAAATTTCCACCACAGAACCTGAATACTATAAGTGGACTCAGTGGATTTTTCTTC AGTTACTGAAAAGAGGACTAGCATACCAGGCAGAGGTGCCTGTGAATTGGTGCCCTGCTCTTGGAACAGTTTTGGCTAATGAGGAAGTGGTGGATGGAGT GAGTGAACGTGGGGGGCATCCAGTGATAAGAAAGCCAATGAGACAATGGATGCTGAAGATTACTGCTTATGCGGATCGGCTTCTTCAAGACCTAGACGAA CTTGACTGGCCTGAGAGCATAAAAGAAATGCAACGAAATTGGATTGGGAGATCTGAAGGGGCTGAGCTGGAGTTTTGTGTTCTTGACGAAGAATCAAATG AACGAGACATAAAAATCATTGTGTACACCACAAGGCCTGATACCATTTTTGGAGTGACATATTTGGTTGTGGCACCAGAGCATTCCATGCTTTCAACGAT AGTTTCTGTTGGTCAAAGCAAAACAGTGGAGGAATACAAAGACATTGCTTCCCGAAAAAGTGACCTGGAGAGGACTGAGCTCCAGAAGGAGAAAACTGGA GTTTTCAGTGGCTGTTATGCCAGAAATCCGGCTAACGGGGAAGCCATTCCAATCTGGGTCGCGGATTATGTACTGGCGAGTTATGGAACTGGCGCTATTA TGGCGGTGCCTGGACACGATACACGTGACCATGAGTTTGCTACTAAATACAAGATACCAGTGCGCATGGTTGTAAAACCGGATGGTGACTACTGTGTAGA TTCAGACAACACGGCTTATGCAAGGGAAGGCACAGCTGTGAATTCATCGAATTCGTCATCTGGTCTTGATCTCAATGGTTTACCTAGCAGAGAAGCTGCA GTCAAAGTCATTGAATGGGCTGAGAAATATGGAAGTGGGAAGACAAAGGTGAACTACAAGTTGAGGGATTGGCTTTTTGCACGGCAACGTTACTGGGGGG AACCTATTCCAGTTGTTTTCTTGAAAGACACTGGTGAAAGCATTCCGGTTCCAGAAACTGACCTGCCTCTTACACTGCCGGAACTGGATGATTTTACCCC CACGGGTACAGGAGAACCACCCCTATCAAAAGCTGTTTCTTGGGTGAACACCACTGATCCTTTGTCTGGAAAACCTGCAAGAAGAGAAACTAGCACCATG CCTCAGTGGGCAGGTTCTTGCTGCTATTGGAGCCCCGTTGATGTCTATGTTGGTGGTGCTGAACATGCTGTTCTTCACTTACTTTATTCAAGATTCTGGC ACAAGGTCCTTTATGACATTGGTATTGTATCAACCAAAGAGCCATTCAAGTGCGTTATAAACCAGGGAATCATTCTTGGAGAAGTTCAATATACAGCCCT GAAAGACCAAGATGGGAACTATGTATCTGCGGACTCGGTTGCTACATCTGATGAACTTCTTCAGGAAATAGTTTCCGAGGAAAAGATAAAGAGATGTGGG GATGGTTTTGTGCTGGAAGACGATCCAGGTATTCAGGTGACGGCACGAGCTTACAAGATGAGCAAAAGCAGGGGAAACGTTGTGAACCCTGATGATGTTG TGTGGGAATACGGAGCAGACTCTTTAAGGTTGTATGAGATGTTCATGGGGCCTTTCAGGGAGACAAAACAATGGAACACAAGTGGGATCGAAGGTGTATA CCGTTTCTTGGGGAGAACGTGGAGATTGATCGTTGGCCCACCTCTGGCTGATAGCAGTTTCAGAGATGGGAGTGTGGCGGTGGACGTAGAACCTAGCTTT GAACAACTCCGTTCTCTGCACAGATGCATAGCTAAGGTAACTGAGGAAATTGAAGGGACACGATTTAATACTGGAATTTCTACAATGATGGAGTTCGTCA ATGCAGCATACAAGTGGAATAACCTCCCAAGAAGTATTGCGGAAACATTTGTGCTGGTGCTAGCACCATATGCGCCACACATATCAGAGGAACTTTGGTT TCGGCTGGGGCACCCCGAAACATTGGCTTACGAGCCATTCCCAGAGGCCATGGCGGAGTACCTGAAGGATGCGAAAAAAGTACTGCCAGTTCAGGTGAAC GGCAAGACGAAAGGAACGGTGGAGGTAGAGGAAGGTTGCTCGGAGGAGGAAGCGTTCAGAATAGCATCCGAAGACAGCAAGCTATCAAGGTTTCTGCAGG AGAAACCAGTGGTCAAGATAATATACGTTCCGGGGAAGATATTGAACGTGATAGTTGGCGGGAAGGGGACAAAGCCCAATCCGAACGCTACACGGACTAC CGTTTCATGA
AA sequence Show only first row Show all	>Lus10015552 pacid=23173652 polypeptide=Lus10015552 locus=Lus10015552.g ID=Lus10015552.BGIv1.0 annot-version=v1.0 MMEFRLTTQTPILFLPSLPFPSSSASSRRRSRQSSLSQPPPLPPRSFIQRNAIPFSPILRTSETARNCSCSSSSGASQQLSEEKKKQPPPKRSYPFHEIE PKWQLYWEHNSTFRTPDDIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIDTGTHPKITTFRNIDRF RTQLKSLGFSYDWEREISTTEPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITAYADRLLQDLDE LDWPESIKEMQRNWIGRSEGAELEFCVLDEESNERDIKIIVYTTRPDTIFGVTYLVVAPEHSMLSTIVSVGQSKTVEEYKDIASRKSDLERTELQKEKTG VFSGCYARNPANGEAIPIWVADYVLASYGTGAIMAVPGHDTRDHEFATKYKIPVRMVVKPDGDYCVDSDNTAYAREGTAVNSSNSSSGLDLNGLPSREAA VKVIEWAEKYGSGKTKVNYKLRDWLFARQRYWGEPIPVVFLKDTGESIPVPETDLPLTLPELDDFTPTGTGEPPLSKAVSWVNTTDPLSGKPARRETSTM PQWAGSCCYWSPVDVYVGGAEHAVLHLLYSRFWHKVLYDIGIVSTKEPFKCVINQGIILGEVQYTALKDQDGNYVSADSVATSDELLQEIVSEEKIKRCG DGFVLEDDPGIQVTARAYKMSKSRGNVVNPDDVVWEYGADSLRLYEMFMGPFRETKQWNTSGIEGVYRFLGRTWRLIVGPPLADSSFRDGSVAVDVEPSF EQLRSLHRCIAKVTEEIEGTRFNTGISTMMEFVNAAYKWNNLPRSIAETFVLVLAPYAPHISEELWFRLGHPETLAYEPFPEAMAEYLKDAKKVLPVQVN GKTKGTVEVEEGCSEEEAFRIASEDSKLSRFLQEKPVVKIIYVPGKILNVIVGGKGTKPNPNATRTTVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Lus10015552 [exp]	0	1
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Lus10009671 [exp]	2.0	0.9630
AT5G15700			DNA/RNA polymerases superfamil...		Lus10035150 [exp]	2.2	0.9641
AT3G23070		ATCFM3A	CRM family member 3A (.1)		Lus10001187 [exp]	4.5	0.9482
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Lus10001057 [exp]	4.6	0.9564
AT1G75010		ARC3	ACCUMULATION AND REPLICATION O...		Lus10031930 [exp]	4.7	0.9205
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Lus10028505 [exp]	4.9	0.9483
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Lus10039267 [exp]	5.5	0.9166
AT3G47450		RIF1, ATNOA1, A...	RESISTANT TO INHIBITION WITH F...		Lus10031160 [exp]	7.5	0.9412
AT3G27180			S-adenosyl-L-methionine-depend...		Lus10041566 [exp]	8.5	0.9322
AT5G15700			DNA/RNA polymerases superfamil...		Lus10031952 [exp]	8.5	0.9448

Compare expression of checked genes

Lus10015552 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.